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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo theseus  3.3.0-8

One-liner (summary)

superimpose macromolecules using maximum likelihood

Description

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

License

Unknown

Size

272.3 KB

Downloads

3

Status  Completed
Checksum (MD5) bb6fb34ef1a099b606583fde110a2906
Checksum (SHA-1) 32e5f3b20b7760b3293899598b5f9b78be81de25
Checksum (SHA-256) d20f26741b7347360284a7359c3fd8d10574e0f958e62ae44cc02651cebeb502
Checksum (SHA-512) 537a29d4eb7cf650d853c394987697cba523962b3f6884a84f4da3a668cd1ffa88…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 1 year, 2 months ago
Uploaded By alex-borro
Slug Id theseus_330-8_armhfdeb-wmwy
Unique Id 1EvpRpgWygPK
Version (Raw) 3.3.0-8
Version (Parsed)
  • Major: 3
  • Minor: 3
  • Patch: 0
  • Pre (Str): (empty)
  • Pre (Num Array): 8
  • Type: SemVer (Strict)
  extended metadata
Homepage http://www.theseus3d.org
Installed Size 582.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg theseus_3.3.0-8_armhf.deb 3
272.3 KB
md5 sha1 sha256 sha512
Package Contents (theseus_3.3.0-8_armhf.deb)
Loading...

This package has 16 files/directories.

Dependencies

12

Checksum (md5)

bc99564c1e6f714b1c7058d2f5e7952e

Depends
clustalo
Depends
libc6 >=2.15
Depends
libgsl23 >=2.5
Depends
libgslcblas0 >=2.4
Depends
muscle
Suggests
clustalw
Suggests
dialign
Suggests
kalign
Suggests
mafft
Suggests
probcons
Suggests
t-coffee
Suggests
theseus-examples

You can embed a badge in another website that shows this or the latest version of this package.

To embed the badge for this specific package version, use the following:

[![This version of 'theseus' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/theseus/3.3.0-8/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/theseus/3.3.0-8/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)
|This version of 'theseus' @ Cloudsmith|
.. |This version of 'theseus' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/theseus/3.3.0-8/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/theseus/3.3.0-8/a=armhf;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/theseus/3.3.0-8/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/theseus/3.3.0-8/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'theseus' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/theseus/3.3.0-8/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/theseus/3.3.0-8/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'theseus' @ Cloudsmith" /></a>

rendered as: This version of 'theseus' @ Cloudsmith

To embed the badge for the latest package version, use the following:

[![Latest version of 'theseus' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/theseus/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/theseus/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)
|Latest version of 'theseus' @ Cloudsmith|
.. |Latest version of 'theseus' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/theseus/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/theseus/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/theseus/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/theseus/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'theseus' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/theseus/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/theseus/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'theseus' @ Cloudsmith" /></a>

rendered as: Latest version of 'theseus' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use theseus @ version 3.3.0-8 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install theseus=3.3.0-8
Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.
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