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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo muscle  1:3.8.1551-2

One-liner (summary)

Multiple alignment program of protein sequences

Description

MUSCLE is a multiple alignment program for protein sequences. MUSCLE stands for multiple sequence comparison by log-expectation. In the authors tests, MUSCLE achieved the highest scores of all tested programs on several alignment accuracy benchmarks, and is also one of the fastest programs out there.

License

Unknown

Size

192.6 KB

Downloads

2

Status  Completed
Checksum (MD5) e638284f0e8af531704008c3b9359e94
Checksum (SHA-1) 42f167724a632739b8a6c0dc3fdc9b6f04d7e935
Checksum (SHA-256) 890a0caa948b3ef388bc92572637a4cafb7d1872972d810d6a56caf2437aba02
Checksum (SHA-512) 7abb5d52218979581af0efb30718b10467f24b5b1b3c3ac6427edcee78c9310c98…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 1 year, 1 month ago
Uploaded By alex-borro
Slug Id muscle_381551-2_armhfdeb-wcxn
Unique Id 2mMI8uV89z3x
Version (Raw) 1:3.8.1551-2
Version (Parsed)
  • Epoch: 1
  • Major: 3
  • Minor: 8
  • Patch: 1551
  • Pre (Str): (empty)
  • Pre (Num Array): 2
  • Type: SemVer (Compat)
  extended metadata
Homepage http://www.drive5.com/muscle/
Installed Size 482.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg muscle_3.8.1551-2_armhf.deb 2
192.6 KB
md5 sha1 sha256 sha512
Package Contents (muscle_3.8.1551-2_armhf.deb)
Loading...

This package has 17 files/directories.

Dependencies

8

Checksum (md5)

b9e7426a60772c8a30c526a0fcdb5635

Depends
libc6 >=2.27
Depends
libgcc1 >=1:3.5
Depends
libstdc++6 >=5
Enhances
seaview
Enhances
t-coffee
Replaces
muscle-doc
Conflicts
muscle-doc
Provides
muscle-doc

You can embed a badge in another website that shows this or the latest version of this package.

To embed the badge for this specific package version, use the following:

[![This version of 'muscle' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/muscle/1:3.8.1551-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/muscle/1:3.8.1551-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)
|This version of 'muscle' @ Cloudsmith|
.. |This version of 'muscle' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/muscle/1:3.8.1551-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/muscle/1:3.8.1551-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/muscle/1:3.8.1551-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/muscle/1:3.8.1551-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'muscle' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/muscle/1:3.8.1551-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/muscle/1:3.8.1551-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'muscle' @ Cloudsmith" /></a>

rendered as: This version of 'muscle' @ Cloudsmith

To embed the badge for the latest package version, use the following:

[![Latest version of 'muscle' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/muscle/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/muscle/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)
|Latest version of 'muscle' @ Cloudsmith|
.. |Latest version of 'muscle' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/muscle/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/muscle/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/muscle/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/muscle/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'muscle' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/muscle/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/muscle/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'muscle' @ Cloudsmith" /></a>

rendered as: Latest version of 'muscle' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use muscle @ version 1:3.8.1551-2 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install muscle=1:3.8.1551-2
Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.
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