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Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

ltrsift 1.0.2-8

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One-liner (summary)

postprocessing and classification of LTR retrotransposons

Description

LTRsift is a graphical desktop tool for semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations, such as the ones generated by LTRharvest and LTRdigest. Its user-friendly interface displays LTR retrotransposon candidates, their putative families and their internal structure in a hierarchical fashion, allowing the user to "sift" through the sometimes large results of de novo prediction software. It also offers customizable filtering and classification functionality.

License

Unknown

Size

90.1 KB

Downloads

Status	Completed
Checksum (MD5)	6b5cf5b2d16c75b7fbbb3c0c41c91b9d
Checksum (SHA-1)	11523f26b270d35ef5e0807ca28a0458b533a642
Checksum (SHA-256)	647c5fe5e4d393d4b8e9793064ea95952c07665b789cbc806794c05aedf7cb1a
Checksum (SHA-512)	7718b2f4684a7289cb269129c747463162327e4c0300e182134781b70eabd734b5…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	1 year, 1 month ago
Uploaded By
Slug Id	ltrsift_102-8_arm64deb-tit9
Unique Id	cxqgrDD712MW
Version (Raw)	1.0.2-8
Version (Parsed)	Major: 1 Minor: 0 Patch: 2 Pre (Str): (empty) Pre (Num Array): 8 Type: SemVer (Strict)
	extended metadata
Homepage	http://www.zbh.uni-hamburg.de/LTRsift
Installed Size	340.0 KB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	science

Dependencies

Checksum (md5)

957f578cde83b9afa70e15bba4039173

Depends	libatk1.0-0	>=1.12.4
Depends	libc6	>=2.17
Depends	libcairo2	>=1.2.4
Depends	libfontconfig1	>=2.12.6
Depends	libfreetype6	>=2.2.1
Depends	libgdk-pixbuf2.0-0	>=2.22.0
Depends	libgenometools0
Depends	libglib2.0-0	>=2.35.9
Depends	libgtk2.0-0	>=2.18.0
Depends	libpango-1.0-0	>=1.14.0
Depends	libpangocairo-1.0-0	>=1.14.0
Depends	libpangoft2-1.0-0	>=1.14.0
Recommends	last-align
Recommends	ncbi-blast+

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These instructions assume you have setup the repository first (or read it).

To install/use ltrsift @ version 1.0.2-8 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install ltrsift=1.0.2-8

Warning: Note that this package is for Debian 10 (Buster) / arm64 and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

Previous Version: 1.0.2-8

Next Version: 1.0.2-8

ltrsift 1.0.2-8	debian/buster deb armhf main latest 94.5 KB — 1 year, 1 month ago	4
ltrsift 1.0.2-8	debian/buster deb arm64 main latest 90.1 KB — 1 year, 1 month ago	3
ltrsift 1.0.2-8	debian/buster deb armhf main latest 94.5 KB — 1 year, 1 month ago	4

ltrsift 1.0.2-8

One-liner (summary)

Description

License

Size

Downloads

Tags

This package has 31 files/directories.

ltrsift

ltrsift

ltrsift

Dependencies

Checksum (md5)