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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo hmmer2-pvm  2.3.2+dfsg-6

One-liner (summary)

HMMER programs with PVM (Parallel Virtual Machine) support

Description

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

This package contains HMMER programs compiled with PVM support.

License

Unknown

Size

84.3 KB

Downloads

2

Status  Completed
Checksum (MD5) 928985bbeab63c6adc024de4b4a275cf
Checksum (SHA-1) d9f32e6444e8103185427d51d9541995ef409e5a
Checksum (SHA-256) 5c00637be4973d0c30b1029f8aea0e59da4596abab748a29ed59976a99136fcf
Checksum (SHA-512) 65e852ac63c6b06233ac279761575883749e3215b695fcacf706da78588e427d12…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 1 year, 2 months ago
Uploaded By alex-borro
Slug Id hmmer2-pvm_232dfsg-6_arm64deb-6gl0
Unique Id ukSLza9UnDfD
Version (Raw) 2.3.2+dfsg-6
Version (Parsed)
  • Major: 2
  • Minor: 3
  • Patch: 2
  • Type: SemVer (Strict)
  • Metadata: dfsg-6
  extended metadata
Homepage http://hmmer.janelia.org/
Installed Size 484.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
Source hmmer2
pkg hmmer2-pvm_2.3.2+dfsg-6_arm64.d… 2
84.3 KB
md5 sha1 sha256 sha512
Package Contents (hmmer2-pvm_2.3.2+dfsg-6_arm64.deb)
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This package has 20 files/directories.

Dependencies

5

Checksum (md5)

3fed260db00448c767663b40c5997f53

Depends
libc6 >=2.17
Depends
libpvm3
Depends
libsquid1
Depends
pvm
Suggests
hmmer2-doc >=2.3.2+dfsg-6

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|This version of 'hmmer2-pvm' @ Cloudsmith|
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<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/hmmer2-pvm/2.3.2+dfsg-6/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/hmmer2-pvm/2.3.2+dfsg-6/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'hmmer2-pvm' @ Cloudsmith" /></a>

rendered as: This version of 'hmmer2-pvm' @ Cloudsmith

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rendered as: Latest version of 'hmmer2-pvm' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use hmmer2-pvm @ version 2.3.2+dfsg-6 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install hmmer2-pvm=2.3.2+dfsg-6
Warning: Note that this package is for Debian 10 (Buster) / arm64 and may only work for that configuration.
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