Cloudsmith - Repositories - Ultimaker (ultimaker) - debian-backup (debian-backup) - fastqtl

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Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

fastqtl 2.184+dfsg-6+b1

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One-liner (summary)

Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes

Description

The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs) which are significantly associated with various molecular phenotypes (i.e. expression of known genes, cytosine methylation levels, etc). It performs scans for all possible phenotype-variant pairs in cis (i.e. variants located within a specific window around a phenotype). FastQTL implements a new permutation scheme (Beta approximation) to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels.

License

Unknown

Size

169.4 KB

Downloads

Status	Completed
Checksum (MD5)	f79a16ad753a4f1470d0247f3221ad70
Checksum (SHA-1)	0d5022cf13ad14a10534b09aa1801e8d82cd4ac0
Checksum (SHA-256)	84378db1b4f2af691e3bfdf96697b3a71ccdf6a65594e73526e8dd35aad222ea
Checksum (SHA-512)	36535203c6268dd6e6746a1129513c1db724cb80f2fcf2d8b73eaa3f25709167d5…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	1 year, 1 month ago
Uploaded By
Slug Id	fastqtl_2184dfsg-6b1_arm64deb-boru
Unique Id	hF5nNJ2Y3qPo
Version (Raw)	2.184+dfsg-6+b1
Version (Parsed)	Major: 2 Minor: 184 Type: SemVer (Compat) Metadata: dfsg-6+b1
	extended metadata
Homepage	http://fastqtl.sourceforge.net/
Installed Size	609.0 KB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	science
Source	fastqtl (2.184+dfsg-6)

Dependencies

Checksum (md5)

e9ff3659197966ffb043c5647ce56782

Depends	libblas.so.3
Depends	libblas3
Depends	libboost-iostreams1.67.0
Depends	libboost-program-options1.67.0
Depends	libc6	>=2.25
Depends	libgcc1	>=1:3.0
Depends	libgsl23	>=2.5
Depends	libhts2	>=1.0
Depends	libstdc++6	>=5.2
Depends	r-mathlib
Depends	zlib1g	>=1:1.1.4
Suggests	fastqtl-doc

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<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastqtl/2.184+dfsg-6+b1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastqtl/2.184+dfsg-6+b1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'fastqtl' @ Cloudsmith" /></a>

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|Latest version of 'fastqtl' @ Cloudsmith|
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These instructions assume you have setup the repository first (or read it).

To install/use fastqtl @ version 2.184+dfsg-6+b1 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install fastqtl=2.184+dfsg-6+b1

Warning: Note that this package is for Debian 10 (Buster) / arm64 and may only work for that configuration.

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