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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo fastqc  0.11.8+dfsg-2

One-liner (summary)

quality control for high throughput sequence data

Description

FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.

The main functions of FastQC are * Import of data from BAM, SAM or FastQ files (any variant) * Providing a quick overview to tell you in which areas there may be problems * Summary graphs and tables to quickly assess your data * Export of results to an HTML based permanent report * Offline operation to allow automated generation of reports without running the interactive application

License

Unknown

Size

376.8 KB

Downloads

3

Status  Completed
Checksum (MD5) f05468740b7e4ccc58a26e5e1ff9da04
Checksum (SHA-1) f92d3ff1a02c2b54a32aed203feb3189667cc384
Checksum (SHA-256) 6cacc2c16c1bba867250b651b3392764f2e5addc1d87d2df05cd3f3f60ffd3f8
Checksum (SHA-512) 46d903f7d8c4e0b56766b87ed3dc95fd0abeab1d5dbc536aee582340d619e6dec1…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 1 year, 1 month ago
Uploaded By alex-borro
Slug Id fastqc_0118dfsg-2_alldeb-boey
Unique Id 5ABsONvQCVdK
Version (Raw) 0.11.8+dfsg-2
Version (Parsed)
  • Major: 0
  • Minor: 11
  • Patch: 8
  • Type: SemVer (Strict)
  • Metadata: dfsg-2
  extended metadata
Homepage http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Installed Size 545.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg fastqc_0.11.8+dfsg-2_all.deb 3
376.8 KB
md5 sha1 sha256 sha512
Package Contents (fastqc_0.11.8+dfsg-2_all.deb)
Loading...

This package has 66 files/directories.

Dependencies

5

Checksum (md5)

127062369caba734a59e038cea902063

Depends
default-jre
Depends
libcommons-math3-java
Depends
libfindbin-libs-perl
Depends
libhtsjdk-java
Depends
libjbzip2-java

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[![This version of 'fastqc' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastqc/0.11.8+dfsg-2/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastqc/0.11.8+dfsg-2/a=all;xc=main;d=debian%252Fbuster;t=binary/)
|This version of 'fastqc' @ Cloudsmith|
.. |This version of 'fastqc' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastqc/0.11.8+dfsg-2/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastqc/0.11.8+dfsg-2/a=all;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastqc/0.11.8+dfsg-2/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastqc/0.11.8+dfsg-2/a=all;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'fastqc' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastqc/0.11.8+dfsg-2/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastqc/0.11.8+dfsg-2/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'fastqc' @ Cloudsmith" /></a>

rendered as: This version of 'fastqc' @ Cloudsmith

To embed the badge for the latest package version, use the following:

[![Latest version of 'fastqc' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastqc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastqc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/)
|Latest version of 'fastqc' @ Cloudsmith|
.. |Latest version of 'fastqc' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastqc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastqc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastqc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastqc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'fastqc' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastqc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastqc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'fastqc' @ Cloudsmith" /></a>

rendered as: Latest version of 'fastqc' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use fastqc @ version 0.11.8+dfsg-2 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install fastqc=0.11.8+dfsg-2
Warning: Note that this package is for Debian 10 (Buster) / all and may only work for that configuration.
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