Package Search Help

You can use boolean logic (e.g. AND/OR/NOT) for complex search queries. For more help and examples, see the search documentation.

Search by package name:
my-package (implicit)
name:my-package (explicit)

Search by package filename:
filename:my-package.ext 

Search by package tag:
tag:latest 

Search by package version:
version:1.0.0  prerelease:true (prereleases)
prerelease:false (no prereleases)

Search by package architecture:
architecture:x86_64 

Search by package distribution:
distribution:el 

Search by package license:
license:MIT 

Search by package format:
format:deb 

Search by package status:
status:in_progress 

Search by package file checksum:
checksum:5afba 

Search by package security status:
severity:critical 

Search by package vulnerabilities:
vulnerabilities:>1 
vulnerabilities:<1000 

Search by # of package downloads:
downloads:>8 
downloads:<100 

Search by package type:
type:binary 
type:source 

Search by package size (bytes):
size:>50000 
size:<10000 

Search by dependency name/version:
dependency:log4j 
dependency:log4j=1.0.0 
dependency:log4j>1.0.0 

Search by uploaded date:
uploaded:>"1 day ago" 
uploaded:<"August 14, 2022 EST" 

Search by entitlement token (identifier):
entitlement:3lKPVJPosCsY 

Search by policy violation:
policy_violated:true
deny_policy_violated:true
license_policy_violated:true
vulnerability_policy_violated:true

Search by repository:
repository:repo-name

Search by last download date:
last_downloaded:<"30 days ago" 
last_downloaded:>"August 14, 2022 EST" 

Search queries for all Debian-specific (and related) package types

Search by component:
deb_component:unstable

Search queries for all Maven-specific (and related) package types

Search by group ID:
maven_group_id:org.apache

Search queries for all Docker-specific (and related) package types

Search by image digest:
docker_image_digest:sha256:7c5..6d4
(full hashref only)

Search by layer digest:
docker_layer_digest:sha256:4c4..ae4
(full hashref only)

Search queries for all Generic-specific package types

Search by file path:
generic_filepath:path/to/file.txt

Search by directory:
generic_directory:path/to

Field type modifiers (depending on the type, you can influence behaviour)

For all queries, you can use:
~foo for negation

For string queries, you can use:
^foo to anchor to start of term
foo$ to anchor to end of term
foo*bar for fuzzy matching

For number/date or version queries, you can use:
>foo for values greater than
>=foo for values greater / equal
<foo for values less than
<=foo for values less / equal

Need a secure and centralised artifact repository to deliver Alpine, Cargo, CocoaPods, Composer, Conan, Conda, CRAN, Dart, Debian, Docker, Generic, Go, Helm, Hex, HuggingFace, LuaRocks, Maven, MCP, npm, NuGet, P2, Python, RedHat, Ruby, Swift, Terraform, Vagrant, VSX, Raw & More packages?

Cloudsmith is the new standard in Package / Artifact Management and Software Distribution.

With support for all major package formats, you can trust us to manage your software supply chain.

Start My Free Trial
 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo crac  2.5.0+dfsg-3

One-liner (summary)

integrated RNA-Seq read analysis

Description

CRAC is a tool to analyze High Throughput Sequencing (HTS) data in comparison to a reference genome. It is intended for transcriptomic and genomic sequencing reads. More precisely, with transcriptomic reads as input, it predicts point mutations, indels, splice junction, and chimeric RNAs (ie, non colinear splice junctions). CRAC can also output positions and nature of sequence error that it detects in the reads. CRAC uses a genome index. This index must be computed before running the read analysis. For this sake, use the command "crac-index" on your genome files. You can then process the reads using the command crac. See the man page of CRAC (help file) by typing "man crac". CRAC requires large amount of main memory on your computer. For processing against the Human genome, say 50 million reads of 100 nucleotide each, CRAC requires about 40 gigabytes of main memory. Check whether the system of your computing server is equipped with sufficient amount of memory before launching an analysis.

License

Unknown

Size

292.7 KB

Downloads

3

Status  Completed
Checksum (MD5) e54891136a30f3df154e8b11cf5a5138
Checksum (SHA-1) 74fe55d491b0b6eadc2d11ebb589940d3ef2d20e
Checksum (SHA-256) 49b99004ce5723e04f55a0d017626b3dcf611b6940dd0a15722d1e08c03e13bf
Checksum (SHA-512) e536ddf60d03a3e23accd39e6531792430a94a14f22b3fa4293c1ee7cd3f396b02…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 1 year, 1 month ago
Uploaded By alex-borro
Slug Id crac_250dfsg-3_arm64deb-9b2h
Unique Id fyIW5oj3qeaP
Version (Raw) 2.5.0+dfsg-3
Version (Parsed)
  • Major: 2
  • Minor: 5
  • Patch: 0
  • Type: SemVer (Strict)
  • Metadata: dfsg-3
  extended metadata
Homepage http://crac.gforge.inria.fr/
Installed Size 948.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg crac_2.5.0+dfsg-3_arm64.deb 3
292.7 KB
md5 sha1 sha256 sha512
Package Contents (crac_2.5.0+dfsg-3_arm64.deb)
Loading...

This package has 249 files/directories.

Dependencies

8

Checksum (md5)

081db3c5cf6dd88ece4960c9c5a69d73

Depends
libc6 >=2.17
Depends
libgcc1 >=1:3.0
Depends
libgkarrays1
Depends
libgzstream0
Depends
libhts2 >=1.0
Depends
libjellyfish-2.0-2
Depends
libstdc++6 >=5.2
Depends
zlib1g >=1:1.1.4

You can embed a badge in another website that shows this or the latest version of this package.

To embed the badge for this specific package version, use the following:

[![This version of 'crac' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/crac/2.5.0+dfsg-3/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/crac/2.5.0+dfsg-3/a=arm64;xc=main;d=debian%252Fbuster;t=binary/)
|This version of 'crac' @ Cloudsmith|
.. |This version of 'crac' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/crac/2.5.0+dfsg-3/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/crac/2.5.0+dfsg-3/a=arm64;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/crac/2.5.0+dfsg-3/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/crac/2.5.0+dfsg-3/a=arm64;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'crac' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/crac/2.5.0+dfsg-3/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/crac/2.5.0+dfsg-3/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'crac' @ Cloudsmith" /></a>

rendered as: This version of 'crac' @ Cloudsmith

To embed the badge for the latest package version, use the following:

[![Latest version of 'crac' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/crac/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/crac/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/)
|Latest version of 'crac' @ Cloudsmith|
.. |Latest version of 'crac' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/crac/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/crac/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/crac/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/crac/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'crac' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/crac/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/crac/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'crac' @ Cloudsmith" /></a>

rendered as: Latest version of 'crac' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use crac @ version 2.5.0+dfsg-3 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install crac=2.5.0+dfsg-3
Warning: Note that this package is for Debian 10 (Buster) / arm64 and may only work for that configuration.
Previous Version
Next Version
Top