Cloudsmith - Repositories - Ultimaker (ultimaker) - debian-backup (debian-backup) - velvet-long

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Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

velvet-long 1.2.10+dfsg1-5

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One-liner (summary)

Nucleic acid sequence assembler for very short reads, long version

Description

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.

Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.

This package installs special long-mode versions of Velvet, as recommended in the Velvet tutorials.

License

Unknown

Size

200.5 KB

Downloads

Status	Completed
Checksum (MD5)	b8cb603145780b65727c725d7ad0d7b4
Checksum (SHA-1)	699ce026b422ed9e1251d415b1b575b4f191999f
Checksum (SHA-256)	efab0974981320de782c023c87e185d03f634176fc2378cb8d2e492f52011444
Checksum (SHA-512)	3c8842ac142df47969ca49c2eda646e40b83a216d4ce0e20aa90206000d3c93909…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	6 months ago
Uploaded By
Slug Id	velvet-long_1210dfsg1-5_armhfdeb-ug6h
Unique Id	5sspMvc3DSlY
Version (Raw)	1.2.10+dfsg1-5
Version (Parsed)	Major: 1 Minor: 2 Patch: 10 Type: SemVer (Strict) Metadata: dfsg1-5
	extended metadata
Homepage	http://www.ebi.ac.uk/~zerbino/velvet/
Installed Size	1.3 MB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	science
Source	velvet

Dependencies

Checksum (md5)

48823f3ee268ce20568b9d4a1ec09f57

Depends	libc6	>=2.7
Depends	libgomp1	>=4.9
Depends	velvet
Depends	zlib1g	>=1:1.2.0.2

You can embed a badge in another website that shows this or the latest version of this package.

To embed the badge for this specific package version, use the following:

[![This version of 'velvet-long' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/velvet-long/1.2.10+dfsg1-5/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/velvet-long/1.2.10+dfsg1-5/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)

|This version of 'velvet-long' @ Cloudsmith|
.. |This version of 'velvet-long' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/velvet-long/1.2.10+dfsg1-5/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/velvet-long/1.2.10+dfsg1-5/a=armhf;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/velvet-long/1.2.10+dfsg1-5/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/velvet-long/1.2.10+dfsg1-5/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'velvet-long' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/velvet-long/1.2.10+dfsg1-5/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/velvet-long/1.2.10+dfsg1-5/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'velvet-long' @ Cloudsmith" /></a>

rendered as:

To embed the badge for the latest package version, use the following:

[![Latest version of 'velvet-long' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/velvet-long/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/velvet-long/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)

|Latest version of 'velvet-long' @ Cloudsmith|
.. |Latest version of 'velvet-long' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/velvet-long/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/velvet-long/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/velvet-long/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/velvet-long/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'velvet-long' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/velvet-long/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/velvet-long/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'velvet-long' @ Cloudsmith" /></a>

rendered as:

These instructions assume you have setup the repository first (or read it).

To install/use velvet-long @ version 1.2.10+dfsg1-5 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install velvet-long=1.2.10+dfsg1-5

Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

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