Cloudsmith - Repositories - Ultimaker (ultimaker) - debian-backup (debian-backup) - tvc

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Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

tvc 5.0.3+git20151221.80e144e+d…

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One-liner (summary)

genetic variant caller for Ion Torrent sequencing platforms

Description

Torrent Variant Caller (TVC) is a genetic variant caller for Ion Torrent sequencing platforms, and is specially optimized to exploit the underlying flow signal information in the statistical model to evaluate variants. Torrent Variant Caller is designed to call single-nucleotide polymorphisms (SNPs), multi-nucleotide polymorphisms (MNPs), insertions, deletions, and block substitutions.

License

Unknown

Size

935.2 KB

Downloads

Status	Completed
Checksum (MD5)	2f014f35fd318f9dbd997c3176f4bc60
Checksum (SHA-1)	40bafb60baeb9679651d1a4a88cae022d570c38b
Checksum (SHA-256)	1b31593416f2eba75c6978c784bf19f737bb30ae4301d76af6fad780c114e129
Checksum (SHA-512)	0c02f6e9383e6d342a173eae7745324336ee3d465fd9d771e12eaafa5096759991…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	8 months, 1 week ago
Uploaded By
Slug Id	tvc_503git2015122180e144edfsg-2_armhfdeb-d8u8
Unique Id	VXjjtzGe3TR3
Version (Raw)	5.0.3+git20151221.80e144e+dfsg-2
Version (Parsed)	Major: 5 Minor: 0 Patch: 3 Type: SemVer (Compat) Metadata: git20151221.80e144e+dfsg-2
	extended metadata
Homepage	http://ioncommunity.thermofisher.com
Installed Size	2.5 MB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	science

Dependencies

Checksum (md5)

ea53c2fbb7208163ad6969bbd340820d

Depends	libarmadillo9	>=1:9.200.6+dfsg
Depends	libbamtools2.5.1
Depends	libblas.so.3
Depends	libblas3
Depends	libc6	>=2.27
Depends	libdisorder0	>=0.0.2
Depends	libgcc1	>=1:3.5
Depends	libjsoncpp1	>=1.7.4
Depends	liblapack.so.3
Depends	liblapack3
Depends	libsmithwaterman0	>=0.0+git20160702.2610e25
Depends	libstdc++6	>=5.2
Depends	python
Depends	zlib1g	>=1:1.1.4

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[![This version of 'tvc' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/tvc/5.0.3+git20151221.80e144e+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/tvc/5.0.3+git20151221.80e144e+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)

|This version of 'tvc' @ Cloudsmith|
.. |This version of 'tvc' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/tvc/5.0.3+git20151221.80e144e+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/tvc/5.0.3+git20151221.80e144e+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/tvc/5.0.3+git20151221.80e144e+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/tvc/5.0.3+git20151221.80e144e+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'tvc' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/tvc/5.0.3+git20151221.80e144e+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/tvc/5.0.3+git20151221.80e144e+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'tvc' @ Cloudsmith" /></a>

rendered as:

To embed the badge for the latest package version, use the following:

[![Latest version of 'tvc' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/tvc/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/tvc/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)

|Latest version of 'tvc' @ Cloudsmith|
.. |Latest version of 'tvc' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/tvc/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/tvc/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/tvc/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/tvc/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'tvc' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/tvc/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/tvc/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'tvc' @ Cloudsmith" /></a>

rendered as:

These instructions assume you have setup the repository first (or read it).

To install/use tvc @ version 5.0.3+git20151221.80e144e+dfsg-2 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install tvc=5.0.3+git20151221.80e144e+dfsg-2

Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

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