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Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

tm-align 20170708+dfsg-2

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One-liner (summary)

structural alignment of proteins

Description

TM-align is a computer algorithm for protein structure alignment using dynamic programming. The scoring is performed by the TM-score rotation matrix. This is similar to the RMSD in that unaligned portions of the structure influence the scoring less than the more structurally conserved regions.

License

Unknown

Size

844.4 KB

Downloads

Status	Completed
Checksum (MD5)	693ea7705a60852285911f158c5dcc4a
Checksum (SHA-1)	ed5885ee491100a5501685d01f0456fa6073d8fe
Checksum (SHA-256)	73496b273f528b28d451d76b7c0e3cf3da6c9ff2fd4c18afe8aa44b460cb2485
Checksum (SHA-512)	11825daa4e33c5a0314675146839172675847f209a898f74ab8df3258913d5e49f…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	5 months ago
Uploaded By
Slug Id	tm-align_20170708dfsg-2_armhfdeb-elxu
Unique Id	A6iiSHs4TcoW
Version (Raw)	20170708+dfsg-2
Version (Parsed)	Type: Unknown
	extended metadata
Homepage	http://zhanglab.ccmb.med.umich.edu/TM-align/
Installed Size	1.3 MB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	science

	tm-align 20170708+dfsg-2	debian/buster deb armhf main latest 844.4 KB — 5 months ago	0

Dependencies

Checksum (md5)

ee62b436c506e7fb0183b8934da7af16

Depends	libc6	>=2.27
Depends	libgcc1	>=1:3.5
Depends	libgfortran5	>=8
Suggests	pymol
Suggests	rasmol
Enhances	t-coffee

These instructions assume you have setup the repository first (or read it).

To install/use tm-align @ version 20170708+dfsg-2 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install tm-align=20170708+dfsg-2

Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

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