Cloudsmith - Repositories - Ultimaker (ultimaker) - debian-backup (debian-backup) - snpomatic

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Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

snpomatic 1.0-4

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One-liner (summary)

fast, stringent short-read mapping software

Description

High throughput sequencing technologies generate large amounts of short reads. Mapping these to a reference sequence consumes large amounts of processing time and memory, and read mapping errors can lead to noisy or incorrect alignments.

SNP-o-matic is a fast, stringent short-read mapping software. It supports a multitude of output types and formats, for uses in filtering reads, alignments, sequence-based genotyping calls, assisted reassembly of contigs etc.

License

Unknown

Size

64.1 KB

Downloads

Status	Completed
Checksum (MD5)	bf46e1f0f4091f8fa14e6ebc3dd5e00f
Checksum (SHA-1)	f1b034847a58250b412e8b26090c56d1662b18f4
Checksum (SHA-256)	612f37ca6d1eb2e34526f8dbc186cf2f9af70c7e2adeba5c36e07120b2b0851d
Checksum (SHA-512)	08ac444a8d9e58ae79e285bffc4c8ec08e311f120296989e40dc243505178920f5…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	11 months ago
Uploaded By
Slug Id	snpomatic_10-4_armhfdeb-yl5c
Unique Id	9A6QthyIkvsB
Version (Raw)	1.0-4
Version (Parsed)	Major: 1 Minor: 0 Pre (Str): (empty) Pre (Num Array): 4 Type: SemVer (Compat)
	extended metadata
Homepage	https://github.com/magnusmanske/snpomatic
Installed Size	124.0 KB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	science

Dependencies

Checksum (md5)

1c206e75465a955607872b6a0c9c833a

Depends	libc6	>=2.4
Depends	libgcc1	>=1:3.5
Depends	libstdc++6	>=5.2

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rendered as:

These instructions assume you have setup the repository first (or read it).

To install/use snpomatic @ version 1.0-4 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install snpomatic=1.0-4

Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

Previous Version: 1.0-4

Next Version: 1.0-4

snpomatic 1.0-4	debian/buster deb arm64 main latest 70.3 KB — 11 months ago	3
snpomatic 1.0-4	debian/buster deb armhf main latest 64.1 KB — 11 months ago	3
snpomatic 1.0-4	debian/buster deb arm64 main latest 70.3 KB — 11 months ago	3

snpomatic 1.0-4

One-liner (summary)

Description

License

Size

Downloads

Tags

This package has 16 files/directories.

snpomatic

snpomatic

snpomatic

Dependencies

Checksum (md5)