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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo smithwaterman  0.0+git20160702.2610e25-7

One-liner (summary)

determine similar regions between two strings or genomic sequences

Description

The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure.

License

Unknown

Size

8.8 KB

Downloads

2

Status  Completed
Checksum (MD5) 5d62953d981ad2bafd465231ed740b6b
Checksum (SHA-1) d642595f57028f02b09a20ec23965643ade98821
Checksum (SHA-256) 34569be68a24096d2b5f7691e2a06f4f8d0f7f9f770e4ccb036951a4e448e6ad
Checksum (SHA-512) 75b7001644ec79469a3fee140563ca6ae4647e302c7e0c58259ed35174e27f22d7…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 10 months ago
Uploaded By alex-borro
Slug Id smithwaterman_00git201607022610e25-7_armhfdeb-af9z
Unique Id hWLiLSuR31FM
Version (Raw) 0.0+git20160702.2610e25-7
Version (Parsed)
  • Major: 0
  • Minor: 0
  • Type: SemVer (Compat)
  • Metadata: git20160702.2610e25-7
  extended metadata
Homepage https://github.com/ekg/smithwaterman
Installed Size 24.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
Source libsmithwaterman
pkg smithwaterman_0.0+git20160702.2… 2
8.8 KB
md5 sha1 sha256 sha512
Package Contents (smithwaterman_0.0+git20160702.2610e25-7_armhf.deb)
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This package has 9 files/directories.

Dependencies

5

Checksum (md5)

f114c975ad667c8749af97be7ef3e515

Depends
libc6 >=2.4
Depends
libdisorder0 >=0.0.2
Depends
libgcc1 >=1:3.5
Depends
libsmithwaterman0 >=0.0+git20160702.2610e25
Depends
libstdc++6 >=5.2
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<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/smithwaterman/0.0+git20160702.2610e25-7/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/smithwaterman/0.0+git20160702.2610e25-7/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'smithwaterman' @ Cloudsmith" /></a>

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rendered as: Latest version of 'smithwaterman' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use smithwaterman @ version 0.0+git20160702.2610e25-7 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install smithwaterman=0.0+git20160702.2610e25-7
Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.
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