Cloudsmith - Repositories - Ultimaker (ultimaker) - debian-backup (debian-backup) - saint

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Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

saint 2.5.0+dfsg-3

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One-liner (summary)

Significance Analysis of INTeractome

Description

SAINT implements the scoring algorithm for protein-protein interaction data using label free quantitative proteomics data in AP-MS experiments. It was used for spectral count data in the yeast kinase interactome work not incorporating control purification, as well as a generalized implementation for spectral count data with and without control purification.

Alternatively, you can also run SAINT in combination with ProHits.

The package was written for either doing analysis without or with control IPs and

License

Unknown

Size

72.2 KB

Downloads

Status	Completed
Checksum (MD5)	6502d61e00ea6e90defc10149d4a9961
Checksum (SHA-1)	345854d27c0b1678cbf58762a57041d6d03be150
Checksum (SHA-256)	8ede4ff7ef4bb898bc4907421e4a5c96f7b96973f2388622faa56164fb1a23fc
Checksum (SHA-512)	c57fcf66f3b8fb067f876c72d4144aa4af5e766982858de507a92eddb75af01bdf…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	9 months, 2 weeks ago
Uploaded By
Slug Id	saint_250dfsg-3_armhfdeb-g14t
Unique Id	b1KxAMse2u61
Version (Raw)	2.5.0+dfsg-3
Version (Parsed)	Major: 2 Minor: 5 Patch: 0 Type: SemVer (Strict) Metadata: dfsg-3
	extended metadata
Homepage	http://saint-apms.sourceforge.net/Main.html
Installed Size	236.0 KB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	science

Dependencies

Checksum (md5)

9a89e3a172f5bbfa14b55fb2b9fd4482

Depends	libc6	>=2.7
Depends	libgsl23	>=2.5
Depends	libgslcblas0	>=2.4

You can embed a badge in another website that shows this or the latest version of this package.

To embed the badge for this specific package version, use the following:

[![This version of 'saint' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/saint/2.5.0+dfsg-3/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/saint/2.5.0+dfsg-3/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)

|This version of 'saint' @ Cloudsmith|
.. |This version of 'saint' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/saint/2.5.0+dfsg-3/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/saint/2.5.0+dfsg-3/a=armhf;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/saint/2.5.0+dfsg-3/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/saint/2.5.0+dfsg-3/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'saint' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/saint/2.5.0+dfsg-3/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/saint/2.5.0+dfsg-3/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'saint' @ Cloudsmith" /></a>

rendered as:

To embed the badge for the latest package version, use the following:

[![Latest version of 'saint' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/saint/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/saint/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)

|Latest version of 'saint' @ Cloudsmith|
.. |Latest version of 'saint' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/saint/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/saint/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/saint/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/saint/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'saint' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/saint/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/saint/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'saint' @ Cloudsmith" /></a>

rendered as:

These instructions assume you have setup the repository first (or read it).

To install/use saint @ version 2.5.0+dfsg-3 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install saint=2.5.0+dfsg-3

Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

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