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 Open-Source — ultimaker ultimaker (Ultimaker) / debian-backup — Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).
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Debian logo repeatmasker-recon  1.08-4

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One-liner (summary)

finds repeat families from biological sequences

Description

The RECON package implements a de novo algorithm for the identification of repeat families from biological sequences.

The program implements an approach for the de novo identification and classification of repeat sequence families that is based on extensions to the usual approach of single linkage clustering of local pairwise alignments between genomic sequences. The extensions use multiple alignment information to define the boundaries of individual copies of the repeats and to distinguish homologous but distinct repeat element families. When tested on the human genome, this approach was able to properly identify and group known transposable elements. The program, should be useful for first-pass automatic classification of repeats in newly sequenced genomes.

License

Unknown

Size

94.0 KB

Downloads

0

Tags

debian/buster deb arm64 main latest

Status  Completed
Checksum (MD5) 2a59a21227a17b89597f8a91749da619
Checksum (SHA-1) 62668d092e40e78e454ba6520770ed2737eb6cfd
Checksum (SHA-256) 4c6acb7981df29c705d93e8ababd7a918ca2f4a28d8e5c84e964143492bca956
Checksum (SHA-512) c1640e0eb73b763586352cff49334ef5a3d7ac06e231cef13a021921d9f2d96405…
GPG Signature
Download
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 8 months, 1 week ago
Uploaded By alex-borro
Slug Id repeatmasker-recon_108-4_arm64deb-srli
Unique Id J4kW5OsDvIvv
Version (Raw) 1.08-4
Version (Parsed)
  • Major: 1
  • Minor: 8
  • Pre (Str): (empty)
  • Pre (Num Array): 4
  • Type: SemVer (Compat)
  extended metadata
Homepage http://www.repeatmasker.org/
Installed Size 211.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg repeatmasker-recon_1.08-4_arm64… 0
94.0 KB 		md5 sha1 sha256 sha512
Package Contents (repeatmasker-recon_1.08-4_arm64.deb)
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This package has 35 files/directories.

Dependencies

2

Checksum (md5)

dcc5a8d9eb09854cb92c118bb1e49a31

Depends
libc6 >=2.17
Depends
perl:any
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<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/repeatmasker-recon/1.08-4/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/repeatmasker-recon/1.08-4/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'repeatmasker-recon' @ Cloudsmith" /></a>

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rendered as: Latest version of 'repeatmasker-recon' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use repeatmasker-recon @ version 1.08-4 ...

To install packages, you can quickly setup the repository automatically (recommended): 

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical): 

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages: 

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install repeatmasker-recon=1.08-4
Warning: Note that this package is for Debian 10 (Buster) / arm64 and may only work for that configuration.
Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).
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