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Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

python-bx 0.8.2-1

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One-liner (summary)

library to manage genomic data and its aligment

Description

The bx-python project is a python library and associated set of scripts to allow for rapid implementation of genome scale analyses. The library contains a variety of useful modules, but the particular strengths are: * Classes for reading and working with genome-scale multiple local alignments (in MAF, AXT, and LAV formats) * Generic data structure for indexing on disk files that contain blocks of data associated with intervals on various sequences (used, for example, to provide random access to individual alignments in huge files; optimized for use over network filesystems) * Data structures for working with intervals on sequences * "Binned bitsets" which act just like chromosome sized bit arrays, but lazily allocate regions and allow large blocks of all set or all unset bits to be stored compactly * "Intersecter" for performing fast intersection tests that preserve both query and target intervals and associated annotation

This package provides the Python 2 library.

License

Unknown

Size

559.2 KB

Downloads

Status	Completed
Checksum (MD5)	ee2d024a6084e9d22c3fa8d9bfe6bb10
Checksum (SHA-1)	7d329b121ac139b2a13e051469ef6898e2f2081c
Checksum (SHA-256)	037353fdf8c14bdc6d8d565d051bc329885580ee3e4451ccb8a313ff3fdba689
Checksum (SHA-512)	df064d1ba2d4dc9e1ae613c462d39c9269879ce1ccfa982fd1582a8eb2d6034316…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	11 months, 2 weeks ago
Uploaded By
Slug Id	python-bx_082-1_arm64deb-qyez
Unique Id	wznvpNPeicqB
Version (Raw)	0.8.2-1
Version (Parsed)	Major: 0 Minor: 8 Patch: 2 Pre (Str): (empty) Pre (Num Array): 1 Type: SemVer (Strict)
	extended metadata
Homepage	https://github.com/bxlab/bx-python
Installed Size	2.7 MB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	python

Dependencies

Checksum (md5)

9b3efa4da630b50224268d832a79e454

Depends	libc6	>=2.17
Depends	python	>=2.7~
Depends	python	<<2.8
Depends	python-numpy
Depends	python-six
Depends	python:any	>=2.7~
Depends	python:any	<<2.8
Depends	zlib1g	>=1:1.1.4

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<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-bx/0.8.2-1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-bx/0.8.2-1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'python-bx' @ Cloudsmith" /></a>

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|Latest version of 'python-bx' @ Cloudsmith|
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rendered as:

These instructions assume you have setup the repository first (or read it).

To install/use python-bx @ version 0.8.2-1 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install python-bx=0.8.2-1

Warning: Note that this package is for Debian 10 (Buster) / arm64 and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

Previous Version: 0.8.2-1

Next Version: 0.8.2-1

python-bx 0.8.2-1	debian/buster deb armhf main latest 588.1 KB — 11 months, 1 week ago	3
python-bx 0.8.2-1	debian/buster deb arm64 main latest 559.2 KB — 11 months, 2 weeks ago	3
python-bx 0.8.2-1	debian/buster deb armhf main latest 588.1 KB — 11 months, 1 week ago	3

python-bx 0.8.2-1

One-liner (summary)

Description

License

Size

Downloads

Tags

This package has 175 files/directories.

python-bx

python-bx

python-bx

Dependencies

Checksum (md5)