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Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

python-biopython 1.73+dfsg-1

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One-liner (summary)

Python library for bioinformatics (implemented in Python 2)

Description

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project.

This package is targeting Python version 2.

License

Unknown

Size

1.3 MB

Downloads

Status	Completed
Checksum (MD5)	5da1ce64961e1da0dcfeea14242b7bd0
Checksum (SHA-1)	9e525db4a40adff70fce39ae237b2021f8d472ce
Checksum (SHA-256)	638fea69f1ec1fe5e08366f73f81154c4c823e7d0e8359b9d1f48707c8a334c4
Checksum (SHA-512)	fb4e069a858534771aee80f7ca1d3c4840314967f07a59292d689600386f2559c5…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	5 months ago
Uploaded By
Slug Id	python-biopython_173dfsg-1_armhfdeb-6hvj
Unique Id	WkI8eDkss8ef
Version (Raw)	1.73+dfsg-1
Version (Parsed)	Major: 1 Minor: 73 Type: SemVer (Compat) Metadata: dfsg-1
	extended metadata
Homepage	http://biopython.org
Installed Size	8.6 MB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	python

Dependencies

Checksum (md5)

6de2bbb6157030ab9be0d76a49c1c470

Depends	libc6	>=2.4
Depends	python	>=2.7~
Depends	python	<<2.8
Depends	python-numpy	>=1:1.16.0~rc1
Depends	python-numpy-abi9
Depends	python-reportlab
Depends	python:any	<<2.8
Depends	python:any	>=2.7~
Recommends	ncbi-blast+
Recommends	python-biopython-doc	=1.73+dfsg-1
Suggests	clustalo
Suggests	clustalw
Suggests	dialign
Suggests	dssp
Suggests	emboss
Suggests	fasttree
Suggests	mafft
Suggests	muscle
Suggests	phylip
Suggests	phyml
Suggests	prank
Suggests	probcons
Suggests	python-matplotlib
Suggests	python-mysqldb
Suggests	python-pil
Suggests	python-psycopg2
Suggests	python-rdflib	>=4
Suggests	python-renderpm
Suggests	python-scipy
Suggests	python-tk
Suggests	raxml
Suggests	samtools
Suggests	t-coffee
Suggests	w3-dtd-mathml
Suggests	wise	>=2.4.1-16

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[![This version of 'python-biopython' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biopython/1.73+dfsg-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biopython/1.73+dfsg-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)

|This version of 'python-biopython' @ Cloudsmith|
.. |This version of 'python-biopython' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biopython/1.73+dfsg-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biopython/1.73+dfsg-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biopython/1.73+dfsg-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biopython/1.73+dfsg-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'python-biopython' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biopython/1.73+dfsg-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biopython/1.73+dfsg-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'python-biopython' @ Cloudsmith" /></a>

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To embed the badge for the latest package version, use the following:

[![Latest version of 'python-biopython' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biopython/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biopython/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)

|Latest version of 'python-biopython' @ Cloudsmith|
.. |Latest version of 'python-biopython' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biopython/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biopython/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biopython/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biopython/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'python-biopython' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biopython/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biopython/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'python-biopython' @ Cloudsmith" /></a>

rendered as:

These instructions assume you have setup the repository first (or read it).

To install/use python-biopython @ version 1.73+dfsg-1 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install python-biopython=1.73+dfsg-1

Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

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