Cloudsmith - Repositories - Ultimaker (ultimaker) - debian-backup (debian-backup) - python-biom-format

Package Search Help

You can use boolean logic (e.g. AND/OR/NOT) for complex search queries. For more help and examples, see the search documentation.

Search by package name:
my-package _(implicit)
name:my-package _(explicit)

Search by package filename:
filename:my-package.ext

Search by package tag:
tag:latest

Search by package version:
version:1.0.0 prerelease:true _{(prereleases)}
prerelease:false _{(no prereleases)}

Search by package architecture:
architecture:x86_64

Search by package distribution:
distribution:el

Search by package license:
license:MIT

Search by package format:
format:deb

Search by package status:
status:in_progress

Search by package file checksum:
checksum:5afba

Search by package security status:
severity:critical

Search by package vulnerabilities:
vulnerabilities:>1
vulnerabilities:<1000

Search by # of package downloads:
downloads:>8
downloads:<100

Search by package type:
type:binary
type:source

Search by package size (bytes):
size:>50000
size:<10000

Search by dependency name/version:
dependency:log4j
dependency:log4j=1.0.0
dependency:log4j>1.0.0

Search by uploaded date:
uploaded:>"1 day ago"
uploaded:<"August 14, 2022 EST"

Search by entitlement token (identifier):
entitlement:3lKPVJPosCsY

Search by policy violation:
policy_violated:true
deny_policy_violated:true
license_policy_violated:true
vulnerability_policy_violated:true

Search by repository:
repository:repo-name

Search queries for all Debian-specific (and related) package types

Search by component:
deb_component:unstable

Search queries for all Maven-specific (and related) package types

Search by group ID:
maven_group_id:org.apache

Search queries for all Docker-specific (and related) package types

Search by image digest:
docker_image_digest:sha256:7c5..6d4
(full hashref only)

Search by layer digest:
docker_layer_digest:sha256:4c4..ae4
(full hashref only)

Field type modifiers (depending on the type, you can influence behaviour)

For all queries, you can use:
~foo for negation

For string queries, you can use:
^foo to anchor to start of term
foo$ to anchor to end of term
foo*bar for fuzzy matching

For number/date or version queries, you can use:
>foo for values greater than
>=foo for values greater / equal
<foo for values less than
<=foo for values less / equal

Need a secure and centralised artifact repository to deliver Alpine, Cargo, CocoaPods, Composer, Conan, Conda, CRAN, Dart, Debian, Docker, Go, Helm, Hex, LuaRocks, Maven, npm, NuGet, P2, Python, RedHat, Ruby, Swift, Terraform, Vagrant, Raw & More packages?

Cloudsmith is the new standard in Package / Artifact Management and Software Distribution.

With support for all major package formats, you can trust us to manage your software supply chain.

Start My Free Trial

Set Me Up

Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

python-biom-format 2.1.7+dfsg-2

Download

One-liner (summary)

Biological Observation Matrix (BIOM) format (Python 2)

Description

The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium candidate project.

The BIOM format is designed for general use in broad areas of comparative -omics. For example, in marker-gene surveys, the primary use of this format is to represent OTU tables: the observations in this case are OTUs and the matrix contains counts corresponding to the number of times each OTU is observed in each sample. With respect to metagenome data, this format would be used to represent metagenome tables: the observations in this case might correspond to SEED subsystems, and the matrix would contain counts corresponding to the number of times each subsystem is observed in each metagenome. Similarly, with respect to genome data, this format may be used to represent a set of genomes: the observations in this case again might correspond to SEED subsystems, and the counts would correspond to the number of times each subsystem is observed in each genome.

This package provides the BIOM format library for the Python 2 interpreter.

License

Unknown

Size

134.0 KB

Downloads

Status	Completed
Checksum (MD5)	4771af66c69c94b46eef0451dd7a58ce
Checksum (SHA-1)	411da4ecd0645f82067d27087984aafe1a13ca4d
Checksum (SHA-256)	4cb7202449ee9ebe608a97deca026d205b06203b02cace686c54c11e30bfe1d7
Checksum (SHA-512)	503daf55fc21474de862727c90f1303e7288eb8552f5e85fbb02b53f77e71e2ddf…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	3 months, 1 week ago
Uploaded By
Slug Id	python-biom-format_217dfsg-2_armhfdeb-kkps
Unique Id	qY9V1wjENrnG
Version (Raw)	2.1.7+dfsg-2
Version (Parsed)	Major: 2 Minor: 1 Patch: 7 Type: SemVer (Strict) Metadata: dfsg-2
	extended metadata
Homepage	http://biom-format.org/
Installed Size	602.0 KB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	python

Dependencies

Checksum (md5)

6f141f6bb94b0b418078a4d422ba33d9

Depends	libc6	>=2.4
Depends	pyqi
Depends	python	<<2.8
Depends	python	>=2.7~
Depends	python-click
Depends	python-future
Depends	python-numpy	>=1:1.16.0~rc1
Depends	python-numpy-abi9
Depends	python-pandas
Depends	python-scipy
Depends	python-six	>=1.10.0
Depends	python:any	<<2.8
Depends	python:any	>=2.7~
Suggests	python-biom-format-doc

You can embed a badge in another website that shows this or the latest version of this package.

To embed the badge for this specific package version, use the following:

[![This version of 'python-biom-format' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biom-format/2.1.7+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biom-format/2.1.7+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)

|This version of 'python-biom-format' @ Cloudsmith|
.. |This version of 'python-biom-format' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biom-format/2.1.7+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biom-format/2.1.7+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biom-format/2.1.7+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biom-format/2.1.7+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'python-biom-format' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biom-format/2.1.7+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biom-format/2.1.7+dfsg-2/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'python-biom-format' @ Cloudsmith" /></a>

rendered as:

To embed the badge for the latest package version, use the following:

[![Latest version of 'python-biom-format' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biom-format/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biom-format/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)

|Latest version of 'python-biom-format' @ Cloudsmith|
.. |Latest version of 'python-biom-format' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biom-format/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biom-format/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biom-format/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biom-format/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'python-biom-format' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/python-biom-format/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/python-biom-format/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'python-biom-format' @ Cloudsmith" /></a>

rendered as:

These instructions assume you have setup the repository first (or read it).

To install/use python-biom-format @ version 2.1.7+dfsg-2 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install python-biom-format=2.1.7+dfsg-2

Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

Previous Version

Next Version