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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo plink  1.07+dfsg-2

One-liner (summary)

whole-genome association analysis toolset

Description

plink expects as input the data from SNP (single nucleotide polymorphism) chips of many individuals and their phenotypical description of a disease. It finds associations of single or pairs of DNA variations with a phenotype and can retrieve SNP annotation from an online source.

SNPs can evaluated individually or as pairs for their association with the disease phenotypes. The joint investigation of copy number variations is supported. A variety of statistical tests have been implemented.

Please note: The executable was renamed to plink1 because of a name clash. Please read more about this in /usr/share/doc/plink/README.Debian.

License

Unknown

Size

936.3 KB

Downloads

0

Status  Completed
Checksum (MD5) b2c39113462269df2c80bf9e4365ebbc
Checksum (SHA-1) 6fef91f1ab5f5d2dc92fd45fec3aec140a02ab6f
Checksum (SHA-256) fcaca11d2089ed573ea6c7ef274d6af8ae9886b7f1d23dcafc7a585b61d68f8e
Checksum (SHA-512) 39b4913b0f45011c1e0cf14a8b561ba5bac85333c2b824188ec808edfde84a056e…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 4 months ago
Uploaded By alex-borro
Slug Id plink_107dfsg-2_arm64deb-qjjr
Unique Id GLD7q4rzxs9i
Version (Raw) 1.07+dfsg-2
Version (Parsed)
  • Major: 1
  • Minor: 7
  • Type: SemVer (Compat)
  • Metadata: dfsg-2
  extended metadata
Homepage http://zzz.bwh.harvard.edu/plink/
Installed Size 2.7 MB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg plink_1.07+dfsg-2_arm64.deb 0
936.3 KB
md5 sha1 sha256 sha512
Package Contents (plink_1.07+dfsg-2_arm64.deb)
Loading...

This package has 34 files/directories.

Dependencies

5

Checksum (md5)

3f88f23c96c529c6702d3ff105694f13

Depends
libc6 >=2.17
Depends
libgcc1 >=1:3.0
Depends
libstdc++6 >=5.2
Depends
zlib1g >=1:1.1.4
Recommends
med-config >=2.1
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You can embed a badge in another website that shows this or the latest version of this package.

To embed the badge for this specific package version, use the following:

[![This version of 'plink' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/plink/1.07+dfsg-2/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/plink/1.07+dfsg-2/a=arm64;xc=main;d=debian%252Fbuster;t=binary/)
|This version of 'plink' @ Cloudsmith|
.. |This version of 'plink' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/plink/1.07+dfsg-2/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/plink/1.07+dfsg-2/a=arm64;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/plink/1.07+dfsg-2/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/plink/1.07+dfsg-2/a=arm64;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'plink' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/plink/1.07+dfsg-2/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/plink/1.07+dfsg-2/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'plink' @ Cloudsmith" /></a>

rendered as: This version of 'plink' @ Cloudsmith

To embed the badge for the latest package version, use the following:

[![Latest version of 'plink' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/plink/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/plink/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/)
|Latest version of 'plink' @ Cloudsmith|
.. |Latest version of 'plink' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/plink/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/plink/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/plink/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/plink/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'plink' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/plink/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/plink/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'plink' @ Cloudsmith" /></a>

rendered as: Latest version of 'plink' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use plink @ version 1.07+dfsg-2 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install plink=1.07+dfsg-2
Warning: Note that this package is for Debian 10 (Buster) / arm64 and may only work for that configuration.
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