Cloudsmith - Repositories - Ultimaker (ultimaker) - debian-backup (debian-backup) - phyx

Package Search Help

You can use boolean logic (e.g. AND/OR/NOT) for complex search queries. For more help and examples, see the search documentation.

Search by package name:
my-package _(implicit)
name:my-package _(explicit)

Search by package filename:
filename:my-package.ext

Search by package tag:
tag:latest

Search by package version:
version:1.0.0 prerelease:true _{(prereleases)}
prerelease:false _{(no prereleases)}

Search by package architecture:
architecture:x86_64

Search by package distribution:
distribution:el

Search by package license:
license:MIT

Search by package format:
format:deb

Search by package status:
status:in_progress

Search by package file checksum:
checksum:5afba

Search by package security status:
severity:critical

Search by package vulnerabilities:
vulnerabilities:>1
vulnerabilities:<1000

Search by # of package downloads:
downloads:>8
downloads:<100

Search by package type:
type:binary
type:source

Search by package size (bytes):
size:>50000
size:<10000

Search by dependency name/version:
dependency:log4j
dependency:log4j=1.0.0
dependency:log4j>1.0.0

Search by uploaded date:
uploaded:>"1 day ago"
uploaded:<"August 14, 2022 EST"

Search by entitlement token (identifier):
entitlement:3lKPVJPosCsY

Search by policy violation:
policy_violated:true
deny_policy_violated:true
license_policy_violated:true
vulnerability_policy_violated:true

Search by repository:
repository:repo-name

Search by last download date:
last_downloaded:<"30 days ago"
last_downloaded:>"August 14, 2022 EST"

Search queries for all Debian-specific (and related) package types

Search by component:
deb_component:unstable

Search queries for all Maven-specific (and related) package types

Search by group ID:
maven_group_id:org.apache

Search queries for all Docker-specific (and related) package types

Search by image digest:
docker_image_digest:sha256:7c5..6d4
(full hashref only)

Search by layer digest:
docker_layer_digest:sha256:4c4..ae4
(full hashref only)

Search queries for all Generic-specific package types

Search by file path:
generic_filepath:path/to/file.txt

Search by directory:
generic_directory:path/to

Field type modifiers (depending on the type, you can influence behaviour)

For all queries, you can use:
~foo for negation

For string queries, you can use:
^foo to anchor to start of term
foo$ to anchor to end of term
foo*bar for fuzzy matching

For number/date or version queries, you can use:
>foo for values greater than
>=foo for values greater / equal
<foo for values less than
<=foo for values less / equal

Need a secure and centralised artifact repository to deliver Alpine, Cargo, CocoaPods, Composer, Conan, Conda, CRAN, Dart, Debian, Docker, Generic, Go, Helm, Hex, HuggingFace, LuaRocks, Maven, npm, NuGet, P2, Python, RedHat, Ruby, Swift, Terraform, Vagrant, Raw & More packages?

Cloudsmith is the new standard in Package / Artifact Management and Software Distribution.

With support for all major package formats, you can trust us to manage your software supply chain.

Start My Free Trial

Set Me Up

Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

phyx 0.999+ds-1

Download

One-liner (summary)

UNIX-style phylogenetic analyses on trees and sequences

Description

phyx provides a convenient, lightweight and inclusive toolkit consisting of programs spanning the wide breadth of programs utilized by researchers performing phylogenomic analyses. Modeled after Unix/GNU/Linux command line tools, individual programs perform a single task and operate on standard I/O streams. A result of this stream-centric approach is that, for most programs, only a single sequence or tree is in memory at any moment. Thus, large datasets can be processed with minimal memory requirements. phyx’s ever-growing complement of programs consists of over 35 programs focused on exploring, manipulating, analyzing and simulating phylogenetic objects (alignments, trees and MCMC logs). As with standard Unix command line tools, these programs can be piped (together with non-phyx tools), allowing the easy construction of efficient analytical pipelines.

License

Unknown

Size

1.6 MB

Downloads

Status	Completed
Checksum (MD5)	23e4975f32afcf9bf5d2ade4fe3e02d9
Checksum (SHA-1)	bccdde4d8cd7bfe919239cb234be7bcd6908e20c
Checksum (SHA-256)	d71398076c83bab1fbe172462afedb367bb0a5a0d0a512226733a316a6e4a06c
Checksum (SHA-512)	71af1a9049c84648d981846f70d05cd9c39089f025ffffc75dfe0844438748243c…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	10 months, 3 weeks ago
Uploaded By
Slug Id	phyx_0999ds-1_arm64deb-bfwe
Unique Id	WfHX5NITtMQN
Version (Raw)	0.999+ds-1
Version (Parsed)	Major: 0 Minor: 999 Type: SemVer (Compat) Metadata: ds-1
	extended metadata
Homepage	https://github.com/FePhyFoFum/phyx
Installed Size	13.1 MB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	science

Dependencies

Checksum (md5)

e8852c97cd56b71aeff5bb5d43b83678

Depends	libarmadillo9	>=1:9.100.5+dfsg
Depends	libblas.so.3
Depends	libblas3
Depends	libc6	>=2.23
Depends	libgcc1	>=1:4.2
Depends	libgomp1	>=4.9
Depends	liblapack.so.3
Depends	liblapack3
Depends	libnlopt-cxx0
Depends	libnlopt0	>=2.2.4
Depends	libstdc++6	>=5.2

You can embed a badge in another website that shows this or the latest version of this package.

To embed the badge for this specific package version, use the following:

[![This version of 'phyx' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/phyx/0.999+ds-1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/phyx/0.999+ds-1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/)

|This version of 'phyx' @ Cloudsmith|
.. |This version of 'phyx' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/phyx/0.999+ds-1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/phyx/0.999+ds-1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/phyx/0.999+ds-1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/phyx/0.999+ds-1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'phyx' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/phyx/0.999+ds-1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/phyx/0.999+ds-1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'phyx' @ Cloudsmith" /></a>

rendered as:

To embed the badge for the latest package version, use the following:

[![Latest version of 'phyx' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/phyx/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/phyx/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/)

|Latest version of 'phyx' @ Cloudsmith|
.. |Latest version of 'phyx' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/phyx/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/phyx/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/phyx/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/phyx/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'phyx' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/phyx/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/phyx/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'phyx' @ Cloudsmith" /></a>

rendered as:

These instructions assume you have setup the repository first (or read it).

To install/use phyx @ version 0.999+ds-1 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install phyx=0.999+ds-1

Warning: Note that this package is for Debian 10 (Buster) / arm64 and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

Previous Version

Next Version