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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo phipack  0.0.20160614-3

One-liner (summary)

PHI test and other tests of recombination

Description

The PhiPack software package implements a few tests for recombination and can produce refined incompatibility matrices as well. Specifically, PHIPack implements the 'Pairwise Homoplasy Index', Maximum Chi2 and the 'Neighbour Similarity Score'. The program Phi can be run to produce a p-value of recombination within a data set and the program profile can be run to determine regions exhibiting strongest evidence mosaicism.

License

Unknown

Size

38.5 KB

Downloads

0

Status  Completed
Checksum (MD5) b0af873b6d21d0d702574784d67ca5c9
Checksum (SHA-1) b460b724a9289504bd8f5298e660f7f53d167039
Checksum (SHA-256) 5b92dd1e590d5bbce9ffca5ed61cfa0949afc0661f41c03764d765a2ccbc65f7
Checksum (SHA-512) 37be9a85ac331cb46377807b69448de82456055f534d59af3b1b1bfede3a7dd5db…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 5 months ago
Uploaded By alex-borro
Slug Id phipack_0020160614-3_armhfdeb-z2wp
Unique Id PZcXogcGcPQ6
Version (Raw) 0.0.20160614-3
Version (Parsed)
  • Major: 0
  • Minor: 0
  • Patch: 20160614
  • Pre (Str): (empty)
  • Pre (Num Array): 3
  • Type: SemVer (Strict)
  extended metadata
Homepage http://www.maths.otago.ac.nz/~dbryant/software/phimanual.pdf
Installed Size 106.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg phipack_0.0.20160614-3_armhf.deb 0
38.5 KB
md5 sha1 sha256 sha512
Package Contents (phipack_0.0.20160614-3_armhf.deb)
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This package has 18 files/directories.

Dependencies

3

Checksum (md5)

d2c3ade5e05e6a92bb1626c99192ac47

Depends
libc6 >=2.7
Depends
libgcc1 >=1:3.5
Depends
libstdc++6 >=4.9
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<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/phipack/0.0.20160614-3/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/phipack/0.0.20160614-3/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'phipack' @ Cloudsmith" /></a>

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|Latest version of 'phipack' @ Cloudsmith|
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rendered as: Latest version of 'phipack' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use phipack @ version 0.0.20160614-3 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install phipack=0.0.20160614-3
Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.
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