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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo pbh5tools  0.8.0+git20170929.58d54ff+d…

One-liner (summary)

tools for manipulating Pacific Biosciences HDF5 files

Description

This package provides functionality for manipulating and extracting data from cmp.h5 and bas.h5 files produced by the Pacific Biosciences sequencers. cmp.h5 files contain alignment information while bas.h5 files contain base-call information.

This package is part of the SMRTAnalysis suite.

License

Unknown

Size

8.6 KB

Downloads

0

Status  Completed
Checksum (MD5) f020dfdd8b170f14da9b4f9c7e198bcf
Checksum (SHA-1) 6805b54b429d8c509212ea0e03b23b9fca1e0387
Checksum (SHA-256) ca022f2906df9872db86343bdfbb83b5ac00e3d85a8aee0fd694048de83baa07
Checksum (SHA-512) 322bba66564d416395e763a3570fff685f9c3563252e0b492f560b7c8a9ab5f036…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 6 months ago
Uploaded By alex-borro
Slug Id pbh5tools_080git2017092958d54ffdfsg-1_alldeb-mqku
Unique Id KyUEWWAC21tZ
Version (Raw) 0.8.0+git20170929.58d54ff+dfsg-1
Version (Parsed)
  • Major: 0
  • Minor: 8
  • Patch: 0
  • Type: SemVer (Compat)
  • Metadata: git20170929.58d54ff+dfsg-1
  extended metadata
Homepage https://github.com/PacificBiosciences/pbh5tools
Installed Size 38.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg pbh5tools_0.8.0+git20170929.58d… 0
8.6 KB
md5 sha1 sha256 sha512
Package Contents (pbh5tools_0.8.0+git20170929.58d54ff+dfsg-1_all.deb)
Loading...

This package has 19 files/directories.

Dependencies

3

Checksum (md5)

4d963ef276971b5b5b6b93d12c399e9e

Depends
python-pbh5tools >=0.8.0+git20170929.58d54ff+dfsg-1
Depends
python-pkg-resources
Depends
python:any
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   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/pbh5tools/0.8.0+git20170929.58d54ff+dfsg-1/a=all;xc=main;d=debian%252Fbuster;t=binary/
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<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/pbh5tools/0.8.0+git20170929.58d54ff+dfsg-1/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/pbh5tools/0.8.0+git20170929.58d54ff+dfsg-1/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'pbh5tools' @ Cloudsmith" /></a>

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rendered as: Latest version of 'pbh5tools' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use pbh5tools @ version 0.8.0+git20170929.58d54ff+dfsg-1 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install pbh5tools=0.8.0+git20170929.58d54ff+dfsg-1
Warning: Note that this package is for Debian 10 (Buster) / all and may only work for that configuration.
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