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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo pbgenomicconsensus  2.3.2-5

One-liner (summary)

Pacific Biosciences variant and consensus caller

Description

The GenomicConsensus package provides Quiver, Pacific Biosciences' flagship consensus and variant caller. Quiver is an algorithm that finds the maximum likelihood template sequence given PacBio reads of the template. These reads are modeled using a conditional random field approach that prescribes a probability to a read given a template sequence. In addition to the base sequence of each read, Quiver uses several additional quality value covariates that the base caller provides.

This package is part of the SMRTAnalysis suite

License

Unknown

Size

33.5 KB

Downloads

0

Status  Completed
Checksum (MD5) ced644b7e1bd83e3ba4b776ff66c654e
Checksum (SHA-1) 72a1aaceda7c1f28c02f4f41788332f88d6829ba
Checksum (SHA-256) 9560f767552cf8f79db376231697d7e718968a8c747b29ae6c4c570644af5bb4
Checksum (SHA-512) e0eb9a344161fe445413f1a65808bdbae3326cda4bb8143055ac9a6bb0b86686d6…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 3 months, 1 week ago
Uploaded By alex-borro
Slug Id pbgenomicconsensus_232-5_alldeb-hevy
Unique Id foQN6jg7bvcB
Version (Raw) 2.3.2-5
Version (Parsed)
  • Major: 2
  • Minor: 3
  • Patch: 2
  • Pre (Str): (empty)
  • Pre (Num Array): 5
  • Type: SemVer (Strict)
  extended metadata
Homepage https://github.com/PacificBiosciences/GenomicConsensus
Installed Size 77.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg pbgenomicconsensus_2.3.2-5_all.… 0
33.5 KB
md5 sha1 sha256 sha512
Package Contents (pbgenomicconsensus_2.3.2-5_all.deb)
Loading...

This package has 34 files/directories.

Dependencies

4

Checksum (md5)

1c8ab2750ef7b8e64385d04da5580404

Depends
python-pbgenomicconsensus =2.3.2-5
Depends
python-pkg-resources
Depends
python:any
Recommends
python-consensuscore2

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These instructions assume you have setup the repository first (or read it).

To install/use pbgenomicconsensus @ version 2.3.2-5 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install pbgenomicconsensus=2.3.2-5
Warning: Note that this package is for Debian 10 (Buster) / all and may only work for that configuration.
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