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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo pbalign-doc  0.3.2-1

One-liner (summary)

documentation for pbalign

Description

pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.

pbalign is part of the SMRTAnalysis suite. This package contains its documentation

License

Unknown

Size

40.2 KB

Downloads

0

Status  Completed
Checksum (MD5) 404cc1563084a91f6428520184df0338
Checksum (SHA-1) 30d4634d8cb5cfcf73d4b60b78203482997b907e
Checksum (SHA-256) 59b98f6faca3a315f629b31f0ce662247e816746cbcc312db44a6721ddd6a6a5
Checksum (SHA-512) 63abb6562611e22ae282df33133c449ea506352cbe4a8ad43e42bbe59d2fb456d5…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 3 months, 1 week ago
Uploaded By alex-borro
Slug Id pbalign-doc_032-1_alldeb-kv9a
Unique Id 9r5kKestj6lC
Version (Raw) 0.3.2-1
Version (Parsed)
  • Major: 0
  • Minor: 3
  • Patch: 2
  • Pre (Str): (empty)
  • Pre (Num Array): 1
  • Type: SemVer (Strict)
  extended metadata
Homepage https://github.com/PacificBiosciences/pbalign
Installed Size 234.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section doc
Source pbalign
pkg pbalign-doc_0.3.2-1_all.deb 0
40.2 KB
md5 sha1 sha256 sha512
Package Contents (pbalign-doc_0.3.2-1_all.deb)
Loading...

This package has 54 files/directories.

Dependencies

2

Checksum (md5)

f5c5ed3ddab5d2fdaee9b628e5c3deeb

Depends
libjs-jquery
Depends
libjs-underscore

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[![This version of 'pbalign-doc' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/pbalign-doc/0.3.2-1/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/pbalign-doc/0.3.2-1/a=all;xc=main;d=debian%252Fbuster;t=binary/)
|This version of 'pbalign-doc' @ Cloudsmith|
.. |This version of 'pbalign-doc' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/pbalign-doc/0.3.2-1/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true
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image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/pbalign-doc/0.3.2-1/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/pbalign-doc/0.3.2-1/a=all;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'pbalign-doc' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/pbalign-doc/0.3.2-1/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/pbalign-doc/0.3.2-1/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'pbalign-doc' @ Cloudsmith" /></a>

rendered as: This version of 'pbalign-doc' @ Cloudsmith

To embed the badge for the latest package version, use the following:

[![Latest version of 'pbalign-doc' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/pbalign-doc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/pbalign-doc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/)
|Latest version of 'pbalign-doc' @ Cloudsmith|
.. |Latest version of 'pbalign-doc' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/pbalign-doc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/pbalign-doc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/pbalign-doc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/pbalign-doc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'pbalign-doc' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/pbalign-doc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/pbalign-doc/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'pbalign-doc' @ Cloudsmith" /></a>

rendered as: Latest version of 'pbalign-doc' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use pbalign-doc @ version 0.3.2-1 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install pbalign-doc=0.3.2-1
Warning: Note that this package is for Debian 10 (Buster) / all and may only work for that configuration.
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