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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo norsp  1.0.6-4

One-liner (summary)

predictor of non-regular secondary structure

Description

NORSp is a publicly available predictor for disordered regions in proteins. Specifically, it predicts long regions with no regular secondary structure. Upon submission of a protein sequence, NORSp analyses the protein about its secondary structure, the presence of transmembrane helices and coiled-coils. It then returns the presence and position of disordered regions.

NORSp can be useful for biologists in several ways. For example, crystallographers can check whether their proteins contain NORS regions and make the decision about whether to proceed with the experiments since NORS proteins may be difficult to crystallise, as demonstrated by the their low occurrence in PDB. Biologists interested in protein structure-function relationship may also find it interesting to verify whether the protein-protein interaction sites coincide with NORS regions.

License

Unknown

Size

276.3 KB

Downloads

0

Status  Completed
Checksum (MD5) 92771ba7ff442742038aab546ef858ff
Checksum (SHA-1) 6fe4a195d510fbb8f07d15e75b004e18fbf3dc10
Checksum (SHA-256) b89d822a9eabadc5f6ef8aa7a1849c19b0c404518d13c8ec5173c2a6b64788dd
Checksum (SHA-512) 990919ada7cb19ca5d365da8fcbf7671397849b25e643a09bfc972122ac9906ebf…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 6 months, 3 weeks ago
Uploaded By alex-borro
Slug Id norsp_106-4_alldeb-b1b7
Unique Id ASph0pbxmV56
Version (Raw) 1.0.6-4
Version (Parsed)
  • Major: 1
  • Minor: 0
  • Patch: 6
  • Pre (Str): (empty)
  • Pre (Num Array): 4
  • Type: SemVer (Strict)
  extended metadata
Homepage https://rostlab.org/owiki/index.php/NORSp_-_predictor_of_NOn-Regular_Secondary_…
Installed Size 1.5 MB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg norsp_1.0.6-4_all.deb 0
276.3 KB
md5 sha1 sha256 sha512
Package Contents (norsp_1.0.6-4_all.deb)
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This package has 22 files/directories.

Dependencies

6

Checksum (md5)

8b08d4e62dd05f60f553edfd23e25d3f

Depends
perl:any
Recommends
blast2
Recommends
librg-utils-perl
Recommends
ncoils
Recommends
profphd
Suggests
pp-popularity-contest
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|Latest version of 'norsp' @ Cloudsmith|
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rendered as: Latest version of 'norsp' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use norsp @ version 1.0.6-4 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install norsp=1.0.6-4
Warning: Note that this package is for Debian 10 (Buster) / all and may only work for that configuration.
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