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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo nanook  1.33+dfsg-1

One-liner (summary)

pre- and post-alignment analysis of nanopore sequencing data

Description

NanoOK is a flexible, multi-reference software for pre- and post- alignment analysis of nanopore sequencing data, quality and error profiles.

NanoOK (pronounced na-nook) is a tool for extraction, alignment and analysis of Nanopore reads. NanoOK will extract reads as FASTA or FASTQ files, align them (with a choice of alignment tools), then generate a comprehensive multi-page PDF report containing yield, accuracy and quality analysis. Along the way, it generates plain text files which can be used for further analysis, as well as graphs suitable for inclusion in presentations and papers.

License

Unknown

Size

187.5 KB

Downloads

2

Status  Completed
Checksum (MD5) 22560869d78e8f34fe8cf8d0a47472a9
Checksum (SHA-1) c120104d00b36d5636f915ca6e0befae7d6ddaf2
Checksum (SHA-256) 05f5eb43287d709b8e8b656607393adbc613bf0a40299c1e992f47c64fec546e
Checksum (SHA-512) 6b5d539e872a56e62a53bf81999eabe1ac06d054bffdaccb0766da32df7c6bbaad…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 10 months ago
Uploaded By alex-borro
Slug Id nanook_133dfsg-1_alldeb-eehg
Unique Id xgoLSuILqAMQ
Version (Raw) 1.33+dfsg-1
Version (Parsed)
  • Major: 1
  • Minor: 33
  • Type: SemVer (Compat)
  • Metadata: dfsg-1
  extended metadata
Homepage https://documentation.tgac.ac.uk/display/NANOOK/NanoOK
Installed Size 283.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg nanook_1.33+dfsg-1_all.deb 2
187.5 KB
md5 sha1 sha256 sha512
Package Contents (nanook_1.33+dfsg-1_all.deb)
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This package has 27 files/directories.

Dependencies

12

Checksum (md5)

804b54257b7634d016cdde7242aa192b

Depends
default-jre-headless
Depends
hdf5-tools
Depends
last-align
Depends
libcommons-io-java
Depends
r-cran-ggplot2
Depends
r-cran-gridextra
Depends
r-cran-reshape
Depends
r-cran-scales
Depends
texlive-latex-base
Recommends
blasr
Recommends
bwa
Suggests
default-jre
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|This version of 'nanook' @ Cloudsmith|
.. |This version of 'nanook' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/nanook/1.33+dfsg-1/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/nanook/1.33+dfsg-1/a=all;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/nanook/1.33+dfsg-1/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/nanook/1.33+dfsg-1/a=all;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'nanook' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/nanook/1.33+dfsg-1/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/nanook/1.33+dfsg-1/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'nanook' @ Cloudsmith" /></a>

rendered as: This version of 'nanook' @ Cloudsmith

To embed the badge for the latest package version, use the following:

[![Latest version of 'nanook' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/nanook/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/nanook/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/)
|Latest version of 'nanook' @ Cloudsmith|
.. |Latest version of 'nanook' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/nanook/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/nanook/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/nanook/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/nanook/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'nanook' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/nanook/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/nanook/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'nanook' @ Cloudsmith" /></a>

rendered as: Latest version of 'nanook' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use nanook @ version 1.33+dfsg-1 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install nanook=1.33+dfsg-1
Warning: Note that this package is for Debian 10 (Buster) / all and may only work for that configuration.
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