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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo murasaki-mpi  1.68.6-8+b1

One-liner (summary)

homology detection tool across multiple large genomes (MPI-version)

Description

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is * exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

License

Unknown

Size

548.8 KB

Downloads

1

Status  Completed
Checksum (MD5) 2c5b6e76b77d6de5a319a7872ce748df
Checksum (SHA-1) 4c0e45f911971a853b2242551eab256f7a889f92
Checksum (SHA-256) 5987a2bcac6376f3b476337bcdfd33a9547ff913d9f04cb83bec30c8ee971b90
Checksum (SHA-512) 588921eb1ddf51d44d9782ec58749ddbf1eee3381713c6e7a230a8cdb27d601cbf…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 10 months, 3 weeks ago
Uploaded By alex-borro
Slug Id murasaki-mpi_1686-8b1_arm64deb-idqm
Unique Id 7liQ1ssUuujq
Version (Raw) 1.68.6-8+b1
Version (Parsed)
  • Major: 1
  • Minor: 68
  • Patch: 6
  • Pre (Str): (empty)
  • Pre (Num Array): 8
  • Type: SemVer (Strict)
  • Metadata: b1
  extended metadata
Homepage http://murasaki.dna.bio.keio.ac.jp/wiki/
Installed Size 3.8 MB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
Source murasaki (1.68.6-8)
pkg murasaki-mpi_1.68.6-8+b1_arm64.… 1
548.8 KB
md5 sha1 sha256 sha512
Package Contents (murasaki-mpi_1.68.6-8+b1_arm64.deb)
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This package has 31 files/directories.

Dependencies

10

Checksum (md5)

899e5f192cbfd3eb99dfcc64a9867553

Depends
libboost-filesystem1.67.0
Depends
libboost-iostreams1.67.0
Depends
libboost-regex1.67.0 >=1.67.0-10
Depends
libboost-system1.67.0
Depends
libc6 >=2.17
Depends
libcrypto++6
Depends
libgcc1 >=1:3.0
Depends
libopenmpi3
Depends
libstdc++6 >=5.2
Depends
murasaki-common
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|This version of 'murasaki-mpi' @ Cloudsmith|
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image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/murasaki-mpi/1.68.6-8+b1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/murasaki-mpi/1.68.6-8+b1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'murasaki-mpi' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/murasaki-mpi/1.68.6-8+b1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/murasaki-mpi/1.68.6-8+b1/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'murasaki-mpi' @ Cloudsmith" /></a>

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|Latest version of 'murasaki-mpi' @ Cloudsmith|
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   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/murasaki-mpi/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/
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<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/murasaki-mpi/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/murasaki-mpi/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'murasaki-mpi' @ Cloudsmith" /></a>

rendered as: Latest version of 'murasaki-mpi' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use murasaki-mpi @ version 1.68.6-8+b1 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install murasaki-mpi=1.68.6-8+b1
Warning: Note that this package is for Debian 10 (Buster) / arm64 and may only work for that configuration.
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