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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo mummer  3.23+dfsg-4

One-liner (summary)

Efficient sequence alignment of full genomes

Description

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

License

Unknown

Size

759.5 KB

Downloads

1

Status  Completed
Checksum (MD5) e4769289616d24d2a1eae8eaa995d9b0
Checksum (SHA-1) 83ec5481454e3864569811f50761a7afa904ecb4
Checksum (SHA-256) 666b57a957a5d339124dda92aa78554443c970464748fe52a0441e861fd8f235
Checksum (SHA-512) 03eea718bf3a873de96f04ae4deb90ff03325c27d6add15a395debc9ff526ff4eb…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 11 months ago
Uploaded By alex-borro
Slug Id mummer_323dfsg-4_armhfdeb-gymo
Unique Id Iwdg8GvdIt5p
Version (Raw) 3.23+dfsg-4
Version (Parsed)
  • Major: 3
  • Minor: 23
  • Type: SemVer (Compat)
  • Metadata: dfsg-4
  extended metadata
Homepage http://mummer.sourceforge.net/
Installed Size 1.5 MB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg mummer_3.23+dfsg-4_armhf.deb 1
759.5 KB
md5 sha1 sha256 sha512
Package Contents (mummer_3.23+dfsg-4_armhf.deb)
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This package has 96 files/directories.

Dependencies

5

Checksum (md5)

4765dd76c064e2c1d88137cba7432ed3

Depends
gawk
Depends
libc6 >=2.7
Depends
libgcc1 >=1:3.5
Depends
libstdc++6 >=5.2
Depends
perl

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|This version of 'mummer' @ Cloudsmith|
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image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/mummer/3.23+dfsg-4/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/mummer/3.23+dfsg-4/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'mummer' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/mummer/3.23+dfsg-4/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/mummer/3.23+dfsg-4/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'mummer' @ Cloudsmith" /></a>

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|Latest version of 'mummer' @ Cloudsmith|
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rendered as: Latest version of 'mummer' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use mummer @ version 3.23+dfsg-4 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install mummer=3.23+dfsg-4
Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.
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