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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo mummer-doc  3.23+dfsg-4

One-liner (summary)

Documentation for MUMmer

Description

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

This package contains the documentation for MUMmer, a system for rapidly aligning entire genomes.

License

Unknown

Size

1.3 MB

Downloads

3

Status  Completed
Checksum (MD5) 5f18abd887da361f4c056abe4523fcff
Checksum (SHA-1) 5db0702cef3c0307635573509d1b85399776f647
Checksum (SHA-256) 6826b5c0b02c497659ae2909b16ff5a0ef47ea696fd248410b2da6571c91a2e1
Checksum (SHA-512) c806fb0cc96ea830913e0bc6f976b3348dad5f39ecc7d6b1045905af6e86f5dcaa…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 10 months, 3 weeks ago
Uploaded By alex-borro
Slug Id mummer-doc_323dfsg-4_alldeb-rkjo
Unique Id 5j3oY4wtuOSh
Version (Raw) 3.23+dfsg-4
Version (Parsed)
  • Major: 3
  • Minor: 23
  • Type: SemVer (Compat)
  • Metadata: dfsg-4
  extended metadata
Homepage http://mummer.sourceforge.net/
Installed Size 1.7 MB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section doc
Source mummer
pkg mummer-doc_3.23+dfsg-4_all.deb 3
1.3 MB
md5 sha1 sha256 sha512
Package Contents (mummer-doc_3.23+dfsg-4_all.deb)
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These instructions assume you have setup the repository first (or read it).

To install/use mummer-doc @ version 3.23+dfsg-4 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install mummer-doc=3.23+dfsg-4
Warning: Note that this package is for Debian 10 (Buster) / all and may only work for that configuration.
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