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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo med-cloud  3.3

One-liner (summary)

Debian Med bioinformatics applications usable in cloud computing

Description

This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited.

License

Unknown

Size

16.6 KB

Downloads

1

Status  Completed
Checksum (MD5) c594cf82f07cba8468eabaac91a25437
Checksum (SHA-1) 864895a07c11cbb73a89d3f980b0d10dc57dca9f
Checksum (SHA-256) ad79d990fc5ad88107744482ca476abebc70483b9ec4d036993c2cad972829e0
Checksum (SHA-512) c795af3fb14a2d076c77e43747c45037b69a60f9bc40ef92c699e36139d0c25719…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 1 year ago
Uploaded By alex-borro
Slug Id med-cloud_33_alldeb-uqw2
Unique Id PsClJB5s5TJy
Version (Raw) 3.3
Version (Parsed)
  • Major: 3
  • Minor: 3
  • Type: SemVer (Compat)
  extended metadata
Installed Size 37.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section metapackages
Source debian-med
pkg med-cloud_3.3_all.deb 1
16.6 KB
md5 sha1 sha256 sha512
Package Contents (med-cloud_3.3_all.deb)
Loading...

This package has 18 files/directories.

Dependencies

150

Checksum (md5)

6be81ce7f9737a83447e831ca21dba83

Depends
med-config =3.3
Depends
med-tasks =3.3
Recommends
abyss
Recommends
acedb-other
Recommends
aevol
Recommends
alien-hunter
Recommends
altree
Recommends
amap-align
Recommends
ampliconnoise
Recommends
anfo
Recommends
aragorn
Recommends
arden
Recommends
autodock
Recommends
autodock-vina
Recommends
autogrid
Recommends
bamtools
Recommends
bedtools
Recommends
bioperl
Recommends
bioperl-run
Recommends
biosquid
Recommends
blast2
Recommends
bowtie
Recommends
bowtie2
Recommends
boxshade
Recommends
bwa
Recommends
cain
Recommends
cassiopee
Recommends
cd-hit
Recommends
cdbfasta
Recommends
circos
Recommends
clearcut
Recommends
clonalframe
Recommends
clustalo
Recommends
clustalw
Recommends
concavity
Recommends
conservation-code
Recommends
datamash
Recommends
dialign
Recommends
dialign-tx
Recommends
discosnp
Recommends
disulfinder
Recommends
dnaclust
Recommends
dssp
Recommends
embassy-domainatrix
Recommends
embassy-domalign
Recommends
embassy-domsearch
Recommends
emboss
Recommends
exonerate
Recommends
fastdnaml
Recommends
fastlink
Recommends
fastqc
Recommends
fasttree
Recommends
fastx-toolkit
Recommends
fitgcp
Recommends
flexbar
Recommends
freecontact
Recommends
gasic
Recommends
genometools
Recommends
gff2aplot
Recommends
gff2ps
Recommends
giira
Recommends
glam2
Recommends
grinder
Recommends
gromacs
Recommends
hhsuite
Recommends
hmmer
Recommends
idba
Recommends
infernal
Recommends
jellyfish
Recommends
kalign
Recommends
kissplice
Recommends
last-align
Recommends
loki
Recommends
macs
Recommends
mafft
Recommends
mapsembler2
Recommends
maq
Recommends
melting
Recommends
minia
Recommends
mipe
Recommends
mira-assembler
Recommends
mlv-smile
Recommends
mothur
Recommends
mrbayes
Recommends
mummer
Recommends
muscle
Recommends
mustang
Recommends
ncbi-epcr
Recommends
ncbi-tools-bin
Recommends
ncoils
Recommends
neobio
Recommends
paraclu
Recommends
parsinsert
Recommends
pdb2pqr
Recommends
perm
Recommends
phyml
Recommends
phyutility
Recommends
picard-tools
Recommends
plink
Recommends
poa
Recommends
prank
Recommends
prime-phylo
Recommends
primer3
Recommends
probabel
Recommends
probcons
Recommends
proda
Recommends
prodigal
Recommends
pynast
Recommends
python-biopython
Recommends
python-cogent
Recommends
python3-biomaj3-cli
Recommends
python3-biopython
Recommends
r-bioc-hilbertvis
Recommends
r-cran-pvclust
Recommends
r-cran-qtl
Recommends
r-cran-vegan
Recommends
r-other-mott-happy.hbrem
Recommends
raster3d
Recommends
readseq
Recommends
rnahybrid
Recommends
rtax
Recommends
samtools
Recommends
seqan-apps
Recommends
sibsim4
Recommends
sigma-align
Recommends
sim4
Recommends
smalt
Recommends
snap
Recommends
soapdenovo
Recommends
soapdenovo2
Recommends
squizz
Recommends
sra-toolkit
Recommends
ssake
Recommends
staden-io-lib-utils
Recommends
t-coffee
Recommends
tabix
Recommends
theseus
Recommends
tigr-glimmer
Recommends
tophat
Recommends
tree-ppuzzle
Recommends
tree-puzzle
Recommends
vcftools
Recommends
velvet
Recommends
wise
Recommends
zalign
Suggests
bagpipe
Suggests
cufflinks
Suggests
embassy-phylip
Suggests
gmap
Suggests
qiime

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|This version of 'med-cloud' @ Cloudsmith|
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<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/med-cloud/3.3/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/med-cloud/3.3/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'med-cloud' @ Cloudsmith" /></a>

rendered as: This version of 'med-cloud' @ Cloudsmith

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|Latest version of 'med-cloud' @ Cloudsmith|
.. |Latest version of 'med-cloud' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/med-cloud/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/med-cloud/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/med-cloud/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/med-cloud/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'med-cloud' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/med-cloud/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/med-cloud/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'med-cloud' @ Cloudsmith" /></a>

rendered as: Latest version of 'med-cloud' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use med-cloud @ version 3.3 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install med-cloud=3.3
Warning: Note that this package is for Debian 10 (Buster) / all and may only work for that configuration.
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