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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo med-bio-dev  3.3

One-liner (summary)

Debian Med packages for development of bioinformatics applications

Description

This metapackage will install Debian packages which might be helpful for development of applications for biological research.

License

Unknown

Size

17.2 KB

Downloads

3

Status  Completed
Checksum (MD5) f23d68cd7ad22b3d52adbe4f77b4a59c
Checksum (SHA-1) acebba55eba628d335e44b56abbd3d968726fa81
Checksum (SHA-256) 110bf5abbf35a52485e239a5234b80261fd1394f451e7edc4206b465ef4cb1c3
Checksum (SHA-512) 2f41a96009e9ede33e458b5ca3b55dbe5bbadcea3de5efb520827b8cd6edcebefb…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 1 year ago
Uploaded By alex-borro
Slug Id med-bio-dev_33_alldeb-kjut
Unique Id lXNrReYzPIvR
Version (Raw) 3.3
Version (Parsed)
  • Major: 3
  • Minor: 3
  • Type: SemVer (Compat)
  extended metadata
Installed Size 40.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section metapackages
Source debian-med
pkg med-bio-dev_3.3_all.deb 3
17.2 KB
md5 sha1 sha256 sha512
Package Contents (med-bio-dev_3.3_all.deb)
Loading...

This package has 21 files/directories.

Dependencies

227

Checksum (md5)

1e059dbc802745336f1d7fbb261ffe0f

Depends
med-config =3.3
Depends
med-tasks =3.3
Recommends
bio-tradis
Recommends
bioperl
Recommends
bioperl-run
Recommends
biosquid
Recommends
cwltool
Recommends
libace-perl
Recommends
libai-fann-perl
Recommends
libbambamc-dev
Recommends
libbamtools-dev
Recommends
libbio-asn1-entrezgene-perl
Recommends
libbio-chado-schema-perl
Recommends
libbio-coordinate-perl
Recommends
libbio-das-lite-perl
Recommends
libbio-eutilities-perl
Recommends
libbio-graphics-perl
Recommends
libbio-mage-perl
Recommends
libbio-mage-utils-perl
Recommends
libbio-primerdesigner-perl
Recommends
libbio-samtools-perl
Recommends
libbio-scf-perl
Recommends
libbio-tools-phylo-paml-perl
Recommends
libbio-tools-run-alignment-clustalw-perl
Recommends
libbio-tools-run-alignment-tcoffee-perl
Recommends
libbiococoa-dev
Recommends
libbiojava-java
Recommends
libbiojava4-java
Recommends
libbioparser-dev
Recommends
libblasr-dev
Recommends
libbpp-core-dev
Recommends
libbpp-phyl-dev
Recommends
libbpp-phyl-omics-dev
Recommends
libbpp-popgen-dev
Recommends
libbpp-qt-dev
Recommends
libbpp-raa-dev
Recommends
libbpp-seq-dev
Recommends
libbpp-seq-omics-dev
Recommends
libchado-perl
Recommends
libconsensuscore-dev
Recommends
libdivsufsort-dev
Recommends
libedlib-dev
Recommends
libfast5-dev
Recommends
libfastahack-dev
Recommends
libffindex0-dev
Recommends
libfml-dev
Recommends
libfreecontact-dev
Recommends
libfreecontact-perl
Recommends
libgatbcore-dev
Recommends
libgenome-dev
Recommends
libgenome-model-tools-music-perl
Recommends
libgenome-perl
Recommends
libgenometools0-dev
Recommends
libgff-dev
Recommends
libgkarrays-dev
Recommends
libgo-perl
Recommends
libhmsbeagle-dev
Recommends
libhts-dev
Recommends
libhtsjdk-java
Recommends
libjebl2-java
Recommends
libjloda-java
Recommends
libkmer-dev
Recommends
libmems-dev
Recommends
libminimap-dev
Recommends
libmuscle-dev
Recommends
libncbi-vdb-dev
Recommends
libncbi6-dev
Recommends
libncl-dev
Recommends
libngs-java
Recommends
libngs-sdk-dev
Recommends
libnhgri-blastall-perl
Recommends
libopenms-dev
Recommends
libpal-java
Recommends
libpbbam-dev
Recommends
libpbdata-dev
Recommends
libpbihdf-dev
Recommends
libpbseq-dev
Recommends
libpll-dev
Recommends
libqes-dev
Recommends
librcsb-core-wrapper0-dev
Recommends
librdp-taxonomy-tree-java
Recommends
librelion-dev
Recommends
librg-blast-parser-perl
Recommends
librg-reprof-bundle-perl
Recommends
librostlab-blast0-dev
Recommends
librostlab3-dev
Recommends
libsbml5-dev
Recommends
libseqlib-dev
Recommends
libsmithwaterman-dev
Recommends
libsnp-sites1-dev
Recommends
libsort-key-top-perl
Recommends
libspoa-dev
Recommends
libsrf-dev
Recommends
libssm-dev
Recommends
libssw-dev
Recommends
libssw-java
Recommends
libstaden-read-dev
Recommends
libstatgen-dev
Recommends
libswiss-perl
Recommends
libtabixpp-dev
Recommends
libtfbs-perl
Recommends
libthread-pool-dev
Recommends
libvcflib-dev
Recommends
libvibrant6-dev
Recommends
libzerg-perl
Recommends
libzerg0-dev
Recommends
mcl
Recommends
pyfai
Recommends
python-biom-format
Recommends
python-cogent
Recommends
python-corepywrap
Recommends
python-freecontact
Recommends
python-htseq
Recommends
python-kineticstools
Recommends
python-pbcommand
Recommends
python-pbcore
Recommends
python-pbh5tools
Recommends
python-rdkit
Recommends
python3-airr
Recommends
python3-bcbio
Recommends
python3-biomaj3
Recommends
python3-biopython
Recommends
python3-biotools
Recommends
python3-bx
Recommends
python3-cobra
Recommends
python3-csb
Recommends
python3-cutadapt
Recommends
python3-cyvcf2
Recommends
python3-dendropy
Recommends
python3-fast5
Recommends
python3-gfapy
Recommends
python3-gffutils
Recommends
python3-intervaltree-bio
Recommends
python3-ngs
Recommends
python3-pbconsensuscore
Recommends
python3-presto
Recommends
python3-pybedtools
Recommends
python3-pybel
Recommends
python3-pyfaidx
Recommends
python3-pymummer
Recommends
python3-pysam
Recommends
python3-pyvcf
Recommends
python3-ruffus
Recommends
python3-screed
Recommends
python3-sqt
Recommends
python3-treetime
Recommends
r-bioc-biobase
Recommends
r-cran-genetics
Recommends
r-cran-haplo.stats
Recommends
r-cran-phylobase
Recommends
r-cran-rncl
Recommends
r-cran-rnexml
Recommends
ruby-bio
Recommends
ruby-crb-blast
Recommends
sbmltoolbox
Recommends
seqan-dev
Recommends
snakemake
Recommends
toil
Suggests
bioclipse
Suggests
ctdconverter
Suggests
galaxy-lib
Suggests
libbam-dev
Suggests
libbigwig-dev
Suggests
libbiod-dev
Suggests
libdisorder-dev
Suggests
libforester-java
Suggests
libfreecontact-doc
Suggests
libgoby-java
Suggests
libgtextutils-dev
Suggests
libmilib-java
Suggests
libmodhmm-dev
Suggests
libnexml-java
Suggests
libpbcopper-dev
Suggests
libqcpp-dev
Suggests
libroadrunner-dev
Suggests
librostlab-blast-doc
Suggests
librostlab-doc
Suggests
libsvmloc-dev
Suggests
libswarm2-dev
Suggests
mgltools-networkeditor
Suggests
mgltools-pybabel
Suggests
mgltools-vision
Suggests
octace-bioinfo
Suggests
python-biopython-doc
Suggests
python-mmtk
Suggests
python-pyflow
Suggests
python-roadrunner
Suggests
python-screed
Suggests
python3-biopython-sql
Suggests
python3-cgecore
Suggests
python3-consensuscore2
Suggests
python3-ctdopts
Suggests
python3-ete3
Suggests
python3-hyphy
Suggests
python3-mirtop
Suggests
python3-misopy
Suggests
python3-seqcluster
Suggests
python3-skbio
Suggests
r-bioc-affy
Suggests
r-bioc-affyio
Suggests
r-bioc-altcdfenvs
Suggests
r-bioc-annotationdbi
Suggests
r-bioc-biocgenerics
Suggests
r-bioc-biomart
Suggests
r-bioc-biomformat
Suggests
r-bioc-biovizbase
Suggests
r-bioc-bsgenome
Suggests
r-bioc-genomeinfodb
Suggests
r-bioc-genomicalignments
Suggests
r-bioc-genomicfeatures
Suggests
r-bioc-genomicranges
Suggests
r-bioc-graph
Suggests
r-bioc-hypergraph
Suggests
r-bioc-iranges
Suggests
r-bioc-makecdfenv
Suggests
r-bioc-preprocesscore
Suggests
r-bioc-rbgl
Suggests
r-bioc-rsamtools
Suggests
r-bioc-shortread
Suggests
r-bioc-snpstats
Suggests
r-bioc-variantannotation
Suggests
r-bioc-xvector
Suggests
r-cran-natserv
Suggests
r-cran-rentrez
Suggests
r-cran-rocr
Suggests
ruby-rgfa
Suggests
vdjtools

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|This version of 'med-bio-dev' @ Cloudsmith|
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|Latest version of 'med-bio-dev' @ Cloudsmith|
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   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/med-bio-dev/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/
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rendered as: Latest version of 'med-bio-dev' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use med-bio-dev @ version 3.3 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install med-bio-dev=3.3
Warning: Note that this package is for Debian 10 (Buster) / all and may only work for that configuration.
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