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Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

macsyfinder 1.0.5-2

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One-liner (summary)

detection of macromolecular systems in protein datasets

Description

MacSyFinder is a program to model and detect macromolecular systems, genetic pathways... in protein datasets. In prokaryotes, these systems have often evolutionarily conserved properties: they are made of conserved components, and are encoded in compact loci (conserved genetic architecture). The user models these systems with MacSyFinder to reflect these conserved features, and to allow their efficient detection

This package presents the Open Source Java API to biological databases and a series of mostly sequence-based algorithms.

License

Unknown

Size

6.7 MB

Downloads

Status	Completed
Checksum (MD5)	b9d7e59277fd95a6312d4af963401b91
Checksum (SHA-1)	00b64bcc893a33042bef8bd3bd8c9f2921be5653
Checksum (SHA-256)	1a9d084c2d41c4e50ef7659c1f0c473ca69847f626421f29fc51ae27e8953342
Checksum (SHA-512)	91b59eef098aee8867b3f58d75a4d3254596dc6cbeba73a1882c1b98a258f1c486…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	7 months, 3 weeks ago
Uploaded By
Slug Id	macsyfinder_105-2_alldeb-tedl
Unique Id	IuvDksgwl5HD
Version (Raw)	1.0.5-2
Version (Parsed)	Major: 1 Minor: 0 Patch: 5 Pre (Str): (empty) Pre (Num Array): 2 Type: SemVer (Strict)
	extended metadata
Homepage	https://github.com/gem-pasteur/macsyfinder
Installed Size	22.0 MB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	science

Dependencies

Checksum (md5)

ef9337c3bee5417018a4e99fa499af9e

Depends	hmmer
Depends	libjs-jquery
Depends	libjs-underscore
Depends	ncbi-blast+
Depends	python:any	>=2.7~
Depends	python:any	<<2.8

You can embed a badge in another website that shows this or the latest version of this package.

To embed the badge for this specific package version, use the following:

[![This version of 'macsyfinder' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/macsyfinder/1.0.5-2/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/macsyfinder/1.0.5-2/a=all;xc=main;d=debian%252Fbuster;t=binary/)

|This version of 'macsyfinder' @ Cloudsmith|
.. |This version of 'macsyfinder' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/macsyfinder/1.0.5-2/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/macsyfinder/1.0.5-2/a=all;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/macsyfinder/1.0.5-2/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/macsyfinder/1.0.5-2/a=all;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'macsyfinder' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/macsyfinder/1.0.5-2/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/macsyfinder/1.0.5-2/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'macsyfinder' @ Cloudsmith" /></a>

rendered as:

To embed the badge for the latest package version, use the following:

[![Latest version of 'macsyfinder' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/macsyfinder/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/macsyfinder/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/)

|Latest version of 'macsyfinder' @ Cloudsmith|
.. |Latest version of 'macsyfinder' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/macsyfinder/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/macsyfinder/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/macsyfinder/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/macsyfinder/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'macsyfinder' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/macsyfinder/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/macsyfinder/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'macsyfinder' @ Cloudsmith" /></a>

rendered as:

These instructions assume you have setup the repository first (or read it).

To install/use macsyfinder @ version 1.0.5-2 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install macsyfinder=1.0.5-2

Warning: Note that this package is for Debian 10 (Buster) / all and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

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