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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo macs  2.1.2.1-1

One-liner (summary)

Model-based Analysis of ChIP-Seq on short reads sequencers

Description

MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome sequence, allowing for more sensitive and robust prediction. MACS compares favorably to existing ChIP-Seq peak-finding algorithms, is publicly available open source, and can be used for ChIP-Seq with or without control samples.

License

Unknown

Size

2.3 MB

Downloads

1

Status  Completed
Checksum (MD5) 6821fc4428f7723a97b737eb3b007ec9
Checksum (SHA-1) e4b2ffc9da988fe04b4a47e192f09b0dcc6c0f07
Checksum (SHA-256) 1d3965b27aed71ac2005994ae7ae0366384857451d40cd0b20d0aba9ae7209c7
Checksum (SHA-512) ef4d797d0a3a65dd2df28cb811c39eef5b4268169496b1a30058e54523f2ca04c9…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 1 year ago
Uploaded By alex-borro
Slug Id macs_2121-1_armhfdeb-m7vx
Unique Id qWRmlfQo4BU9
Version (Raw) 2.1.2.1-1
Version (Parsed)
  • Major: 2
  • Minor: 1
  • Patch: 2
  • Rev1: 1
  • Pre (Str): (empty)
  • Pre (Num Array): 1
  • Type: SemVer (Compat)
  extended metadata
Homepage https://github.com/taoliu/MACS/
Installed Size 4.1 MB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg macs_2.1.2.1-1_armhf.deb 1
2.3 MB
md5 sha1 sha256 sha512
Package Contents (macs_2.1.2.1-1_armhf.deb)
Loading...

This package has 80 files/directories.

Dependencies

7

Checksum (md5)

30fa48b3e48f5a78813a689059bcce26

Depends
cython
Depends
libc6 >=2.15
Depends
python >=2.7~
Depends
python <<2.8
Depends
python-numpy
Depends
python:any <<2.8
Depends
python:any >=2.7~

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|This version of 'macs' @ Cloudsmith|
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<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/macs/2.1.2.1-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/macs/2.1.2.1-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'macs' @ Cloudsmith" /></a>

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|Latest version of 'macs' @ Cloudsmith|
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rendered as: Latest version of 'macs' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use macs @ version 2.1.2.1-1 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install macs=2.1.2.1-1
Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.
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