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 Open-Source — ultimaker ultimaker (Ultimaker) / debian-backup — Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).
Packages 87951 Package Groups 56001 Public Keys

Debian logo lucy  1.20-1

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One-liner (summary)

DNA sequence quality and vector trimming tool

Description

Lucy is a utility that prepares raw DNA sequence fragments for sequence assembly, possibly using the TIGR Assembler. The cleanup process includes quality assessment, confidence reassurance, vector trimming and vector removal. The primary advantage of Lucy over other similar utilities is that it is a fully integrated, stand alone program.

Lucy was designed and written at The Institute for Genomic Research (TIGR, now the J. Craig Venter Institute), and it has been used here for several years to clean sequence data from automated DNA sequencers prior to sequence assembly and other downstream uses. The quality trimming portion of lucy makes use of phred quality scores, such as those produced by many automated sequencers based on the Sanger sequencing method. As such, lucy’s quality trimming may not be appropriate for sequence data produced by some of the new “next-generation” sequencers.

License

Unknown

Size

39.2 KB

Downloads

0

Tags

debian/buster deb armhf main latest

Status  Completed
Checksum (MD5) 620770ce775a748c83efebeacf79d142
Checksum (SHA-1) 884327998642c32aa5a4b26b3093c297e3676a40
Checksum (SHA-256) a2674485a9507a01013c02b081111286516afc377c2f27f4f1cce45ddac58d11
Checksum (SHA-512) fd2625f3ff9a312f15e983481fe98cd786a9fb2826efe4cffb2bd7e478c2239eb0…
GPG Signature
Download
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 7 months, 1 week ago
Uploaded By alex-borro
Slug Id lucy_120-1_armhfdeb-hfc2
Unique Id aZuk1ugda6yV
Version (Raw) 1.20-1
Version (Parsed)
  • Major: 1
  • Minor: 20
  • Pre (Str): (empty)
  • Pre (Num Array): 1
  • Type: SemVer (Compat)
  extended metadata
Homepage https://lucy.sourceforge.net
Installed Size 73.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg lucy_1.20-1_armhf.deb 0
39.2 KB 		md5 sha1 sha256 sha512
Package Contents (lucy_1.20-1_armhf.deb)
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This package has 16 files/directories.

Dependencies

1

Checksum (md5)

489b1fab53f4217d0d564d99bf67bb7f

Depends
libc6 >=2.7
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You can embed a badge in another website that shows this or the latest version of this package.

To embed the badge for this specific package version, use the following: 

[![This version of 'lucy' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/lucy/1.20-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/lucy/1.20-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)
|This version of 'lucy' @ Cloudsmith|
.. |This version of 'lucy' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/lucy/1.20-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/lucy/1.20-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/lucy/1.20-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/lucy/1.20-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'lucy' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/lucy/1.20-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/lucy/1.20-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'lucy' @ Cloudsmith" /></a>

rendered as: This version of 'lucy' @ Cloudsmith

To embed the badge for the latest package version, use the following: 

[![Latest version of 'lucy' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/lucy/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/lucy/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)
|Latest version of 'lucy' @ Cloudsmith|
.. |Latest version of 'lucy' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/lucy/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/lucy/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/lucy/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/lucy/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'lucy' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/lucy/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/lucy/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'lucy' @ Cloudsmith" /></a>

rendered as: Latest version of 'lucy' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use lucy @ version 1.20-1 ...

To install packages, you can quickly setup the repository automatically (recommended): 

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical): 

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages: 

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install lucy=1.20-1
Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.
Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).
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