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Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

libfreecontact0v5 1.0.21-7+b1

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One-liner (summary)

fast protein contact predictor library

Description

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the shared library implementing freecontact.

License

Unknown

Size

55.3 KB

Downloads

Status	Completed
Checksum (MD5)	f47164dff96c8ff7c3bca54633533a58
Checksum (SHA-1)	97db1ddecefa54b20aacb664ceba6fee96a0ce2c
Checksum (SHA-256)	a7db5d806f88c35254004c63ea2d429c81727b3dd9c68fcdd5737b5ae39aa94b
Checksum (SHA-512)	de716f0c704eae5ad4b066dffc94c348401a5bd595f313be10e05e7de524f79c1a…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	7 months, 3 weeks ago
Uploaded By
Slug Id	libfreecontact0v5_1021-7b1_armhfdeb-uztl
Unique Id	WK0n5PfAWlld
Version (Raw)	1.0.21-7+b1
Version (Parsed)	Major: 1 Minor: 0 Patch: 21 Pre (Str): (empty) Pre (Num Array): 7 Type: SemVer (Strict) Metadata: b1
	extended metadata
Homepage	http://rostlab.org/
Installed Size	117.0 KB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Multi Arch	same
Priority	optional
Section	libs
Source	freecontact (1.0.21-7)

Dependencies

Checksum (md5)

9e6f2557b0507b8471609f14e3be09ba

Depends	libblas.so.3
Depends	libblas3
Depends	libc6	>=2.15
Depends	libgcc1	>=1:3.5
Depends	libgfortran5	>=8
Depends	libgomp1	>=4.9
Depends	liblapack.so.3
Depends	liblapack3
Depends	libstdc++6	>=5.2
Replaces	libfreecontact0
Conflicts	libfreecontact0

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These instructions assume you have setup the repository first (or read it).

To install/use libfreecontact0v5 @ version 1.0.21-7+b1 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install libfreecontact0v5=1.0.21-7+b1

Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

Previous Version: 1.0.21-7+b1

Next Version: 1.0.21-7+b1

		libfreecontact0v5 1.0.21-7+b1	debian/buster deb arm64 main latest 64.9 KB — 7 months, 4 weeks ago	0
		libfreecontact0v5 1.0.21-7+b1	debian/buster deb armhf main latest 55.3 KB — 7 months, 3 weeks ago	0
		libfreecontact0v5 1.0.21-7+b1	debian/buster deb arm64 main latest 64.9 KB — 7 months, 4 weeks ago	0

libfreecontact0v5 1.0.21-7+b1

One-liner (summary)

Description

License

Size

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This package has 13 files/directories.

libfreecontact0v5

libfreecontact0v5

libfreecontact0v5

Dependencies

Checksum (md5)