Cloudsmith - Repositories - Ultimaker (ultimaker) - debian-backup (debian-backup) - libbiojava-java

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Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

libbiojava-java 1:1.7.1-8

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One-liner (summary)

Java API to biological data and applications (default version)

Description

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It includes objects for manipulating sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, and powerful analysis and statistical routines including a dynamic programming toolkit.

BioJava is provided by a vibrant community which meets annually at the Bioinformatics Open Source Conference (BOSC) that traditionally accompanies the Intelligent Systems in Molecular Biology (ISMB) meeting. Much like BioPerl, the employment of this library is valuable for everybody active in the field because of the many tricks of the trade one learns just by communicating on the mailing list.

This is a wrapper package which should enable smooth upgrades to new versions.

License

Unknown

Size

47.3 KB

Downloads

Status	Completed
Checksum (MD5)	26bcc58489f12b1a60dcb6b8ae100693
Checksum (SHA-1)	eef3d8b34b6ba84bb72e57e7e568b9025be0a259
Checksum (SHA-256)	d229b1e30eb9158650f060ee9900e9063ad305d484ccc65c056046a156e507a1
Checksum (SHA-512)	2af300c3ac046a4e2b707425f1eb75a26487d5aa82ee98816c58f837a535e299cf…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	10 months ago
Uploaded By
Slug Id	libbiojava-java_171-8_alldeb-68g5
Unique Id	ogAg5pb5argL
Version (Raw)	1:1.7.1-8
Version (Parsed)	Epoch: 1 Major: 1 Minor: 7 Patch: 1 Pre (Str): (empty) Pre (Num Array): 8 Type: SemVer (Compat)
	extended metadata
Homepage	http://www.biojava.org
Installed Size	118.0 KB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	java
Source	biojava-live

Dependencies

Checksum (md5)

e9242017e86baa6ebfc785493297dd70

Depends	libbiojava1.7-java
Replaces	libbiojava1.6-java
Conflicts	libbiojava1.6-java

You can embed a badge in another website that shows this or the latest version of this package.

To embed the badge for this specific package version, use the following:

[![This version of 'libbiojava-java' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/libbiojava-java/1:1.7.1-8/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/libbiojava-java/1:1.7.1-8/a=all;xc=main;d=debian%252Fbuster;t=binary/)

|This version of 'libbiojava-java' @ Cloudsmith|
.. |This version of 'libbiojava-java' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/libbiojava-java/1:1.7.1-8/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/libbiojava-java/1:1.7.1-8/a=all;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/libbiojava-java/1:1.7.1-8/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/libbiojava-java/1:1.7.1-8/a=all;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'libbiojava-java' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/libbiojava-java/1:1.7.1-8/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/libbiojava-java/1:1.7.1-8/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'libbiojava-java' @ Cloudsmith" /></a>

rendered as:

To embed the badge for the latest package version, use the following:

[![Latest version of 'libbiojava-java' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/libbiojava-java/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/libbiojava-java/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/)

|Latest version of 'libbiojava-java' @ Cloudsmith|
.. |Latest version of 'libbiojava-java' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/libbiojava-java/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/libbiojava-java/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/

image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/libbiojava-java/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/libbiojava-java/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'libbiojava-java' @ Cloudsmith"]

<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/libbiojava-java/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/libbiojava-java/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'libbiojava-java' @ Cloudsmith" /></a>

rendered as:

These instructions assume you have setup the repository first (or read it).

To install/use libbiojava-java @ version 1:1.7.1-8 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install libbiojava-java=1:1.7.1-8

Warning: Note that this package is for Debian 10 (Buster) / all and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

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