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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo jmodeltest  2.1.10+dfsg-7

One-liner (summary)

HPC selection of models of nucleotide substitution

Description

jModelTest is a tool to carry out statistical selection of best-fit models of nucleotide substitution. It implements five different model selection strategies: hierarchical and dynamical likelihood ratio tests (hLRT and dLRT), Akaike and Bayesian information criteria (AIC and BIC), and a decision theory method (DT). It also provides estimates of model selection uncertainty, parameter importances and model-averaged parameter estimates, including model-averaged tree topologies. jModelTest 2 includes High Performance Computing (HPC) capabilities and additional features like new strategies for tree optimization, model- averaged phylogenetic trees (both topology and branch length), heuristic filtering and automatic logging of user activity.

License

Unknown

Size

958.1 KB

Downloads

0

Status  Completed
Checksum (MD5) 058a01ecf649cb4899c2a7efbeafb467
Checksum (SHA-1) 46fe564f0ab9e711c4ede6e0ee7be1aabd48077d
Checksum (SHA-256) 61022f73f9dcf2bc918a607c3737260cd891b30573141e82bcb4bed99c46abf6
Checksum (SHA-512) bd091d80f1c42b2c4bd1160d5153f818cd734553314f9d1ad31b3674d2b049daa7…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 6 months, 3 weeks ago
Uploaded By alex-borro
Slug Id jmodeltest_2110dfsg-7_alldeb-qwc1
Unique Id LuUMQid1QHPr
Version (Raw) 2.1.10+dfsg-7
Version (Parsed)
  • Major: 2
  • Minor: 1
  • Patch: 10
  • Type: SemVer (Strict)
  • Metadata: dfsg-7
  extended metadata
Homepage https://github.com//ddarriba/jmodeltest2
Installed Size 2.6 MB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg jmodeltest_2.1.10+dfsg-7_all.deb 0
958.1 KB
md5 sha1 sha256 sha512
Package Contents (jmodeltest_2.1.10+dfsg-7_all.deb)
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This package has 61 files/directories.

Dependencies

3

Checksum (md5)

2c15b86f182a91881e5044202a25e6db

Depends
alter-sequence-alignment
Depends
libmpj-java
Depends
libpal-java
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<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/jmodeltest/2.1.10+dfsg-7/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/jmodeltest/2.1.10+dfsg-7/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'jmodeltest' @ Cloudsmith" /></a>

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These instructions assume you have setup the repository first (or read it).

To install/use jmodeltest @ version 2.1.10+dfsg-7 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install jmodeltest=2.1.10+dfsg-7
Warning: Note that this package is for Debian 10 (Buster) / all and may only work for that configuration.
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