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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo gwama  2.2.2+dfsg-2

One-liner (summary)

Genome-Wide Association Meta Analysis

Description

GWAMA (Genome-Wide Association Meta Analysis) software performs meta-analysis of the results of GWA studies of binary or quantitative phenotypes. Fixed- and random-effect meta-analyses are performed for both directly genotyped and imputed SNPs using estimates of the allelic odds ratio and 95% confidence interval for binary traits, and estimates of the allelic effect size and standard error for quantitative phenotypes. GWAMA can be used for analysing the results of all different genetic models (multiplicative, additive, dominant, recessive). The software incorporates error trapping facilities to identify strand alignment errors and allele flipping, and performs tests of heterogeneity of effects between studies.

License

Unknown

Size

69.8 KB

Downloads

1

Status  Completed
Checksum (MD5) 7717b777e3d93179ff65c06c9bfd7bf6
Checksum (SHA-1) 8634b16fea86d4a8b85d2c2df7d271799c97c8d8
Checksum (SHA-256) 95ecb52d4ec0e3e2871e14d0b085d72fddf011f72d12d91b4089aab5e9e91a21
Checksum (SHA-512) 19dfbf34ff28b979c0dd057c0c86cc121e22e102385f1ebaee6653d1fd0e5d18e1…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 11 months, 1 week ago
Uploaded By alex-borro
Slug Id gwama_222dfsg-2_arm64deb-aybd
Unique Id 7uCpqZZo2sPU
Version (Raw) 2.2.2+dfsg-2
Version (Parsed)
  • Major: 2
  • Minor: 2
  • Patch: 2
  • Type: SemVer (Strict)
  • Metadata: dfsg-2
  extended metadata
Homepage https://www.geenivaramu.ee/en/tools/gwama
Installed Size 222.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg gwama_2.2.2+dfsg-2_arm64.deb 1
69.8 KB
md5 sha1 sha256 sha512
Package Contents (gwama_2.2.2+dfsg-2_arm64.deb)
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This package has 31 files/directories.

Dependencies

4

Checksum (md5)

8d574613f26d728b4c4d268ac060cf7b

Depends
libc6 >=2.17
Depends
libgcc1 >=1:3.0
Depends
libstdc++6 >=5.2
Depends
zlib1g >=1:1.1.4

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|This version of 'gwama' @ Cloudsmith|
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<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/gwama/2.2.2+dfsg-2/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/gwama/2.2.2+dfsg-2/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'gwama' @ Cloudsmith" /></a>

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|Latest version of 'gwama' @ Cloudsmith|
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rendered as: Latest version of 'gwama' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use gwama @ version 2.2.2+dfsg-2 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install gwama=2.2.2+dfsg-2
Warning: Note that this package is for Debian 10 (Buster) / arm64 and may only work for that configuration.
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