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 Open-Source — ultimaker ultimaker (Ultimaker) / debian-backup — Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).
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Debian logo fastdnaml  1.2.2-14

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One-liner (summary)

Tool for construction of phylogenetic trees of DNA sequences

Description

fastDNAml is a program derived from Joseph Felsenstein's version 3.3 DNAML (part of his PHYLIP package). Users should consult the documentation for DNAML before using this program.

fastDNAml is an attempt to solve the same problem as DNAML, but to do so faster and using less memory, so that larger trees and/or more bootstrap replicates become tractable. Much of fastDNAml is merely a recoding of the PHYLIP 3.3 DNAML program from PASCAL to C.

Note that the homepage of this program is not available any more and so this program will probably not see any further updates.

License

Unknown

Size

57.4 KB

Downloads

1

Tags

debian/buster deb arm64 main latest

Status  Completed
Checksum (MD5) 5524dd38ffc836fceae80a9e8d00dca5
Checksum (SHA-1) c485f305f64419d1a7a6ea19e085326bff28ba31
Checksum (SHA-256) a52c819f6f2dbe7764b7c29cbf2d9282b89d05a187da2fb2d89b2656ec9f2c52
Checksum (SHA-512) 78693a29579895cf3d84149fae4307898a63e3de5d6daab3018ab31cd2545825e3…
GPG Signature
Download
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 9 months ago
Uploaded By alex-borro
Slug Id fastdnaml_122-14_arm64deb-8mr7
Unique Id IR7mq6A7MN8n
Version (Raw) 1.2.2-14
Version (Parsed)
  • Major: 1
  • Minor: 2
  • Patch: 2
  • Pre (Str): (empty)
  • Pre (Num Array): 14
  • Type: SemVer (Strict)
  extended metadata
Homepage ftp://ftp.bio.indiana.edu/molbio/evolve/fastdnaml/fastDNAml.html
Installed Size 229.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg fastdnaml_1.2.2-14_arm64.deb 1
57.4 KB 		md5 sha1 sha256 sha512
Package Contents (fastdnaml_1.2.2-14_arm64.deb)
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This package has 90 files/directories.

Dependencies

2

Checksum (md5)

96dc2a67d1edaa2419b4ea120e69dc0c

Depends
libc6 >=2.17
Suggests
phylip
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[![This version of 'fastdnaml' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastdnaml/1.2.2-14/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastdnaml/1.2.2-14/a=arm64;xc=main;d=debian%252Fbuster;t=binary/)
|This version of 'fastdnaml' @ Cloudsmith|
.. |This version of 'fastdnaml' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastdnaml/1.2.2-14/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastdnaml/1.2.2-14/a=arm64;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastdnaml/1.2.2-14/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastdnaml/1.2.2-14/a=arm64;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'fastdnaml' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastdnaml/1.2.2-14/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastdnaml/1.2.2-14/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'fastdnaml' @ Cloudsmith" /></a>

rendered as: This version of 'fastdnaml' @ Cloudsmith

To embed the badge for the latest package version, use the following: 

[![Latest version of 'fastdnaml' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastdnaml/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastdnaml/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/)
|Latest version of 'fastdnaml' @ Cloudsmith|
.. |Latest version of 'fastdnaml' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastdnaml/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastdnaml/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastdnaml/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastdnaml/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'fastdnaml' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/fastdnaml/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/fastdnaml/latest/a=arm64;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'fastdnaml' @ Cloudsmith" /></a>

rendered as: Latest version of 'fastdnaml' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use fastdnaml @ version 1.2.2-14 ...

To install packages, you can quickly setup the repository automatically (recommended): 

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical): 

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages: 

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install fastdnaml=1.2.2-14
Warning: Note that this package is for Debian 10 (Buster) / arm64 and may only work for that configuration.
Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).
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