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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo embassy-domalign  0.1.660-3

One-liner (summary)

Extra EMBOSS commands for protein domain alignment

Description

The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in the current domalign release are allversusall (sequence similarity data from all-versus-all comparison), domainalign (generates alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file to identify representative structures) and seqalign (extend alignments (DAF file) with sequences (DHF file)).

License

Unknown

Size

65.2 KB

Downloads

0

Status  Completed
Checksum (MD5) 177053a03868129c2bfb4ac28a34949a
Checksum (SHA-1) 47055cbcbe5b344f7813ac7f7a80aec16cdf7564
Checksum (SHA-256) 6d085425c814ab7ada12c9c0ba39827b0f60eed3b3b952df4ac9e362c7840ec2
Checksum (SHA-512) 84d1334376a26da99ee248fb907ed4c669ce85017b2bfc3f02bb9edaad5997d11d…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 8 months, 3 weeks ago
Uploaded By alex-borro
Slug Id embassy-domalign_01660-3_arm64deb-rhrb
Unique Id Va75grQ21KnU
Version (Raw) 0.1.660-3
Version (Parsed)
  • Major: 0
  • Minor: 1
  • Patch: 660
  • Pre (Str): (empty)
  • Pre (Num Array): 3
  • Type: SemVer (Strict)
  extended metadata
Homepage http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN
Installed Size 597.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg embassy-domalign_0.1.660-3_arm6… 0
65.2 KB
md5 sha1 sha256 sha512
Package Contents (embassy-domalign_0.1.660-3_arm64.deb)
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This package has 42 files/directories.

Dependencies

6

Checksum (md5)

de436c0913aa877ec0653a5c00195ddd

Depends
emboss-lib <<6.6.1~
Depends
emboss-lib >=6.6.0-1~
Depends
libc6 >=2.17
Depends
libx11-6
Recommends
emboss
Suggests
embassy
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To install/use embassy-domalign @ version 0.1.660-3 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install embassy-domalign=0.1.660-3
Warning: Note that this package is for Debian 10 (Buster) / arm64 and may only work for that configuration.
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