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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo eigensoft  7.2.1+dfsg-1

One-liner (summary)

reduction of population bias for genetic analyses

Description

The EIGENSOFT package combines functionality from the group's population genetics methods (Patterson et al. 2006) and their EIGENSTRAT stratification method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker's variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes.

License

Unknown

Size

295.1 KB

Downloads

0

Status  Completed
Checksum (MD5) 77ee88a2be2ffde62dbd13c1b84b916b
Checksum (SHA-1) c77a87d5d5ec3c6e1270354ca9102f9cfe139c60
Checksum (SHA-256) 232233f5320c9f36c4f8d3640db09c60f041b383b17ccf3388cb50ad83bcab26
Checksum (SHA-512) a5a1bb1a3ac1e10484a410aade9712a788e1e2948ed779df7c2d4be04485d2e1a6…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 6 months ago
Uploaded By alex-borro
Slug Id eigensoft_721dfsg-1_armhfdeb-uml7
Unique Id TbXxpRNMxnJ6
Version (Raw) 7.2.1+dfsg-1
Version (Parsed)
  • Major: 7
  • Minor: 2
  • Patch: 1
  • Type: SemVer (Strict)
  • Metadata: dfsg-1
  extended metadata
Homepage http://www.hsph.harvard.edu/faculty/alkes-price/software/
Installed Size 1.8 MB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg eigensoft_7.2.1+dfsg-1_armhf.deb 0
295.1 KB
md5 sha1 sha256 sha512
Package Contents (eigensoft_7.2.1+dfsg-1_armhf.deb)
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This package has 182 files/directories.

Dependencies

9

Checksum (md5)

b3c2810a23f71148d432447e415adeb0

Depends
libblas.so.3
Depends
libblas3
Depends
libc6 >=2.23
Depends
libgsl23 >=2.5
Depends
liblapack.so.3
Depends
liblapack3
Depends
liblapacke
Depends
perl:any
Recommends
gnuplot
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<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/eigensoft/7.2.1+dfsg-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/eigensoft/7.2.1+dfsg-1/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'eigensoft' @ Cloudsmith" /></a>

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|Latest version of 'eigensoft' @ Cloudsmith|
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rendered as: Latest version of 'eigensoft' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use eigensoft @ version 7.2.1+dfsg-1 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install eigensoft=7.2.1+dfsg-1
Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.
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