Cloudsmith - Repositories - Ultimaker (ultimaker) - debian-backup (debian-backup) - dnaclust

Package Search Help

You can use boolean logic (e.g. AND/OR/NOT) for complex search queries. For more help and examples, see the search documentation.

Search by package name:
my-package _(implicit)
name:my-package _(explicit)

Search by package filename:
filename:my-package.ext

Search by package tag:
tag:latest

Search by package version:
version:1.0.0 prerelease:true _{(prereleases)}
prerelease:false _{(no prereleases)}

Search by package architecture:
architecture:x86_64

Search by package distribution:
distribution:el

Search by package license:
license:MIT

Search by package format:
format:deb

Search by package status:
status:in_progress

Search by package file checksum:
checksum:5afba

Search by package security status:
severity:critical

Search by package vulnerabilities:
vulnerabilities:>1
vulnerabilities:<1000

Search by # of package downloads:
downloads:>8
downloads:<100

Search by package type:
type:binary
type:source

Search by package size (bytes):
size:>50000
size:<10000

Search by dependency name/version:
dependency:log4j
dependency:log4j=1.0.0
dependency:log4j>1.0.0

Search by uploaded date:
uploaded:>"1 day ago"
uploaded:<"August 14, 2022 EST"

Search by entitlement token (identifier):
entitlement:3lKPVJPosCsY

Search by policy violation:
policy_violated:true
deny_policy_violated:true
license_policy_violated:true
vulnerability_policy_violated:true

Search by repository:
repository:repo-name

Search by last download date:
last_downloaded:<"30 days ago"
last_downloaded:>"August 14, 2022 EST"

Search queries for all Debian-specific (and related) package types

Search by component:
deb_component:unstable

Search queries for all Maven-specific (and related) package types

Search by group ID:
maven_group_id:org.apache

Search queries for all Docker-specific (and related) package types

Search by image digest:
docker_image_digest:sha256:7c5..6d4
(full hashref only)

Search by layer digest:
docker_layer_digest:sha256:4c4..ae4
(full hashref only)

Search queries for all Generic-specific package types

Search by file path:
generic_filepath:path/to/file.txt

Search by directory:
generic_directory:path/to

Field type modifiers (depending on the type, you can influence behaviour)

For all queries, you can use:
~foo for negation

For string queries, you can use:
^foo to anchor to start of term
foo$ to anchor to end of term
foo*bar for fuzzy matching

For number/date or version queries, you can use:
>foo for values greater than
>=foo for values greater / equal
<foo for values less than
<=foo for values less / equal

Need a secure and centralised artifact repository to deliver Alpine, Cargo, CocoaPods, Composer, Conan, Conda, CRAN, Dart, Debian, Docker, Generic, Go, Helm, Hex, HuggingFace, LuaRocks, Maven, npm, NuGet, P2, Python, RedHat, Ruby, Swift, Terraform, Vagrant, Raw & More packages?

Cloudsmith is the new standard in Package / Artifact Management and Software Distribution.

With support for all major package formats, you can trust us to manage your software supply chain.

Start My Free Trial

Set Me Up

Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

dnaclust 3-6+b1

Download

One-liner (summary)

tool for clustering millions of short DNA sequences

Description

dnaclust is a tool for clustering large number of short DNA sequences. The clusters are created in such a way that the "radius" of each clusters is no more than the specified threshold.

The input sequences to be clustered should be in Fasta format. The id of each sequence is based on the first word of the seqeunce in the Fasta format. The first word is the prefix of the header up to the first occurrence of white space characters in the header.

License

Unknown

Size

78.6 KB

Downloads

Status	Completed
Checksum (MD5)	5647845423ecf53d7fabf5be94c64d10
Checksum (SHA-1)	e26e494a7a4321d8b5134c6bc66ed71fb82c40aa
Checksum (SHA-256)	f783d7d9d7d7eb535a505c24cfdba6cbac1b57b49f8b04c04973da88fcdd93b4
Checksum (SHA-512)	7aedfc2c780af0c4a299c72778a6b850a49bdbecc455321a0a73cd03ddad191ed5…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	10 months, 1 week ago
Uploaded By
Slug Id	dnaclust_3-6b1_arm64deb-iumm
Unique Id	3B2qighAnn1m
Version (Raw)	3-6+b1
Version (Parsed)	Type: Unknown
	extended metadata
Homepage	http://dnaclust.sourceforge.net/
Installed Size	309.0 KB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	science
Source	dnaclust (3-6)

	dnaclust 3-6+b1	debian/buster deb arm64 main latest 78.6 KB — 10 months, 1 week ago	1

Dependencies

Checksum (md5)

9a7a3978206a61d0eca5df81c8616728

Depends	libboost-program-options1.67.0
Depends	libc6	>=2.17
Depends	libgcc1	>=1:3.0
Depends	libstdc++6	>=5.2

These instructions assume you have setup the repository first (or read it).

To install/use dnaclust @ version 3-6+b1 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install dnaclust=3-6+b1

Warning: Note that this package is for Debian 10 (Buster) / arm64 and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

Previous Version

Next Version