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Open-Source — ultimaker (Ultimaker) / debian-backup — Project

A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.

Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

dialign-tx 1.0.2-12

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One-liner (summary)

Segment-based multiple sequence alignment

Description

DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities.

License

Unknown

Size

60.7 KB

Downloads

Status	Completed
Checksum (MD5)	62ff1c92bad5d6cad762b40a98206e90
Checksum (SHA-1)	7dc26a186df962a40c3ca59ce8a70feb7df499af
Checksum (SHA-256)	a1dd8cccd4f4d050c2a633d5ba72e3d9e35e0aedb363fddfa387653781dfe381
Checksum (SHA-512)	6af532600d43fcf786dd4cb70db61e946804ba35fca84d58031733d557db77a5ef…
GPG Signature	Download
GPG Fingerprint	c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution	debian/buster - Debian - 10 (Buster)
Storage Region	Dublin, Ireland
Type	Binary (contains binaries and binary artifacts)
Uploaded At	10 months, 2 weeks ago
Uploaded By
Slug Id	dialign-tx_102-12_armhfdeb-tdvf
Unique Id	KTYyyaQqFDOk
Version (Raw)	1.0.2-12
Version (Parsed)	Major: 1 Minor: 0 Patch: 2 Pre (Str): (empty) Pre (Num Array): 12 Type: SemVer (Strict)
	extended metadata
Homepage	http://dialign-tx.gobics.de/
Installed Size	123.0 KB
Maintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority	optional
Section	science
Source	dialign-t

Dependencies

Checksum (md5)

aa7adad25e2eaeeef33b69469239ced3

Depends	dialign-tx-data	=1.0.2-12
Depends	libc6	>=2.7
Enhances	t-coffee

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|Latest version of 'dialign-tx' @ Cloudsmith|
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rendered as:

These instructions assume you have setup the repository first (or read it).

To install/use dialign-tx @ version 1.0.2-12 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update

sudo apt-get install dialign-tx=1.0.2-12

Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.

Still stuck? Need help? Don't panic. Just contact us for help (even if you're not a customer).

Previous Version: 1.0.2-12

Next Version: 1.0.2-12

dialign-tx 1.0.2-12	debian/buster deb arm64 main latest 75.1 KB — 10 months, 3 weeks ago	2
dialign-tx 1.0.2-12	debian/buster deb armhf main latest 60.7 KB — 10 months, 2 weeks ago	2
dialign-tx 1.0.2-12	debian/buster deb arm64 main latest 75.1 KB — 10 months, 3 weeks ago	2

dialign-tx 1.0.2-12

One-liner (summary)

Description

License

Size

Downloads

Tags

This package has 13 files/directories.

dialign-tx

dialign-tx

dialign-tx

Dependencies

Checksum (md5)