Package Search Help

You can use boolean logic (e.g. AND/OR/NOT) for complex search queries. For more help and examples, see the search documentation.

Search by package name:
my-package (implicit)
name:my-package (explicit)

Search by package filename:
filename:my-package.ext 

Search by package tag:
tag:latest 

Search by package version:
version:1.0.0  prerelease:true (prereleases)
prerelease:false (no prereleases)

Search by package architecture:
architecture:x86_64 

Search by package distribution:
distribution:el 

Search by package license:
license:MIT 

Search by package format:
format:deb 

Search by package status:
status:in_progress 

Search by package file checksum:
checksum:5afba 

Search by package security status:
severity:critical 

Search by package vulnerabilities:
vulnerabilities:>1 
vulnerabilities:<1000 

Search by # of package downloads:
downloads:>8 
downloads:<100 

Search by package type:
type:binary 
type:source 

Search by package size (bytes):
size:>50000 
size:<10000 

Search by dependency name/version:
dependency:log4j 
dependency:log4j=1.0.0 
dependency:log4j>1.0.0 

Search by uploaded date:
uploaded:>"1 day ago" 
uploaded:<"August 14, 2022 EST" 

Search by entitlement token (identifier):
entitlement:3lKPVJPosCsY 

Search by policy violation:
policy_violated:true
deny_policy_violated:true
license_policy_violated:true
vulnerability_policy_violated:true

Search by repository:
repository:repo-name

Search by last download date:
last_downloaded:<"30 days ago" 
last_downloaded:>"August 14, 2022 EST" 

Search queries for all Debian-specific (and related) package types

Search by component:
deb_component:unstable

Search queries for all Maven-specific (and related) package types

Search by group ID:
maven_group_id:org.apache

Search queries for all Docker-specific (and related) package types

Search by image digest:
docker_image_digest:sha256:7c5..6d4
(full hashref only)

Search by layer digest:
docker_layer_digest:sha256:4c4..ae4
(full hashref only)

Search queries for all Generic-specific package types

Search by file path:
generic_filepath:path/to/file.txt

Search by directory:
generic_directory:path/to

Field type modifiers (depending on the type, you can influence behaviour)

For all queries, you can use:
~foo for negation

For string queries, you can use:
^foo to anchor to start of term
foo$ to anchor to end of term
foo*bar for fuzzy matching

For number/date or version queries, you can use:
>foo for values greater than
>=foo for values greater / equal
<foo for values less than
<=foo for values less / equal

Need a secure and centralised artifact repository to deliver Alpine, Cargo, CocoaPods, Composer, Conan, Conda, CRAN, Dart, Debian, Docker, Generic, Go, Helm, Hex, HuggingFace, LuaRocks, Maven, npm, NuGet, P2, Python, RedHat, Ruby, Swift, Terraform, Vagrant, VSX, Raw & More packages?

Cloudsmith is the new standard in Package / Artifact Management and Software Distribution.

With support for all major package formats, you can trust us to manage your software supply chain.

Start My Free Trial
 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo clustalw  2.1+lgpl-6

One-liner (summary)

global multiple nucleotide or peptide sequence alignment

Description

This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

License

Unknown

Size

243.1 KB

Downloads

2

Status  Completed
Checksum (MD5) e44f829684c4103075ef696f339a9520
Checksum (SHA-1) 35b47bfc8b304e692a61566154708b086c55cac5
Checksum (SHA-256) 45aa7d54106eaecde1d847d630623124cd39893e4e2dbe6b2c39d7f43893db3f
Checksum (SHA-512) 7d18667221880738a1bd385d09a9ed32a766ed8075e8858c8354ba873bbb82d75a…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 1 year ago
Uploaded By alex-borro
Slug Id clustalw_21lgpl-6_armhfdeb-wic4
Unique Id XbwJIrJSvqP5
Version (Raw) 2.1+lgpl-6
Version (Parsed)
  • Major: 2
  • Minor: 1
  • Type: SemVer (Compat)
  • Metadata: lgpl-6
  extended metadata
Homepage http://www.clustal.org/clustal2/
Installed Size 522.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg clustalw_2.1+lgpl-6_armhf.deb 2
243.1 KB
md5 sha1 sha256 sha512
Package Contents (clustalw_2.1+lgpl-6_armhf.deb)
Loading...

This package has 25 files/directories.

Dependencies

8

Checksum (md5)

10f04879266a17cebaedc8553aac7425

Depends
libc6 >=2.4
Depends
libgcc1 >=1:3.5
Depends
libstdc++6 >=5.2
Suggests
clustalx
Suggests
seaview
Enhances
bioperl-run
Enhances
emboss
Enhances
t-coffee

You can embed a badge in another website that shows this or the latest version of this package.

To embed the badge for this specific package version, use the following:

[![This version of 'clustalw' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/clustalw/2.1+lgpl-6/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/clustalw/2.1+lgpl-6/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)
|This version of 'clustalw' @ Cloudsmith|
.. |This version of 'clustalw' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/clustalw/2.1+lgpl-6/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/clustalw/2.1+lgpl-6/a=armhf;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/clustalw/2.1+lgpl-6/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/clustalw/2.1+lgpl-6/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'clustalw' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/clustalw/2.1+lgpl-6/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/clustalw/2.1+lgpl-6/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'clustalw' @ Cloudsmith" /></a>

rendered as: This version of 'clustalw' @ Cloudsmith

To embed the badge for the latest package version, use the following:

[![Latest version of 'clustalw' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/clustalw/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/clustalw/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)
|Latest version of 'clustalw' @ Cloudsmith|
.. |Latest version of 'clustalw' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/clustalw/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/clustalw/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/
image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/clustalw/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/clustalw/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="Latest version of 'clustalw' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/clustalw/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/clustalw/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true" alt="Latest version of 'clustalw' @ Cloudsmith" /></a>

rendered as: Latest version of 'clustalw' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use clustalw @ version 2.1+lgpl-6 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install clustalw=2.1+lgpl-6
Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.
Previous Version
Next Version
Top