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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo chromimpute  1.0.3+dfsg-1

One-liner (summary)

Large-scale systematic epigenome imputation

Description

ChromImpute takes an existing compendium of epigenomic data and uses it to predict signal tracks for mark-sample combinations not experimentally mapped or to generate a potentially more robust version of data sets that have been mapped experimentally. ChromImpute bases its predictions on features from signal tracks of other marks that have been mapped in the target sample and the target mark in other samples with these features combined using an ensemble of regression trees.

License

Unknown

Size

71.6 KB

Downloads

1

Status  Completed
Checksum (MD5) f00b2d444208b38ff94792a85a785d6e
Checksum (SHA-1) 36793522ee06338d1718cff5d5eae5295383df99
Checksum (SHA-256) b78fdd7d3dc3ce007b906da5c07449de4fcc4fbac902ea191fef7cc84867ff65
Checksum (SHA-512) 020c4bf837b575de937cc588aa6151c8c0b04b446a7d8b617c31f3b9cb448caf9c…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 1 year ago
Uploaded By alex-borro
Slug Id chromimpute_103dfsg-1_alldeb-rcio
Unique Id IIRGtIw6oxDD
Version (Raw) 1.0.3+dfsg-1
Version (Parsed)
  • Major: 1
  • Minor: 0
  • Patch: 3
  • Type: SemVer (Strict)
  • Metadata: dfsg-1
  extended metadata
Homepage http://www.biolchem.ucla.edu/labs/ernst/ChromImpute/
Installed Size 88.0 KB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg chromimpute_1.0.3+dfsg-1_all.deb 1
71.6 KB
md5 sha1 sha256 sha512
Package Contents (chromimpute_1.0.3+dfsg-1_all.deb)
Loading...

This package has 16 files/directories.

Dependencies

7

Checksum (md5)

0d4d9c4edf7333b8a134aca6b6e5c76a

Depends
default-jre
Depends
java10-runtime
Depends
java11-runtime
Depends
java7-runtime
Depends
java8-runtime
Depends
java9-runtime
Depends
jarwrapper >=0.5

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|This version of 'chromimpute' @ Cloudsmith|
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image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/chromimpute/1.0.3+dfsg-1/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/chromimpute/1.0.3+dfsg-1/a=all;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'chromimpute' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/chromimpute/1.0.3+dfsg-1/a=all;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/chromimpute/1.0.3+dfsg-1/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'chromimpute' @ Cloudsmith" /></a>

rendered as: This version of 'chromimpute' @ Cloudsmith

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|Latest version of 'chromimpute' @ Cloudsmith|
.. |Latest version of 'chromimpute' @ Cloudsmith| image:: https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/chromimpute/latest/a=all;xc=main;d=debian%252Fbuster;t=binary/?render=true&show_latest=true
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rendered as: Latest version of 'chromimpute' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use chromimpute @ version 1.0.3+dfsg-1 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install chromimpute=1.0.3+dfsg-1
Warning: Note that this package is for Debian 10 (Buster) / all and may only work for that configuration.
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