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 Open-Source ultimaker ultimaker (Ultimaker) / debian-backup Project
A certifiably-awesome open-source package repository curated by Ultimaker, hosted by Cloudsmith.
Note: Packages in this repository are licensed as GNU General Public License v3.0 or later (dependencies may be licensed differently).

Debian logo bedtools  2.27.1+dfsg-4

One-liner (summary)

suite of utilities for comparing genomic features

Description

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distributed in the filo package.

License

Unknown

Size

497.1 KB

Downloads

0

Status  Completed
Checksum (MD5) 798d34ca7905a78af56bb7f3b22914ca
Checksum (SHA-1) 40103930f22088ce8962257f064cd440e446ce24
Checksum (SHA-256) b85baa9371eefa0de3fc8c68ec35dfe4736c2d0ded05ad3f8b62626ad2172f52
Checksum (SHA-512) 869adce421157fe48b3c1d13596379878b84b0f201795b4f346da68df4e25978a9…
GPG Signature
GPG Fingerprint c0a114330029b468b1146f70c334efcb2c4f9be3
Distribution debian/buster - Debian - 10 (Buster)
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 3 months, 2 weeks ago
Uploaded By alex-borro
Slug Id bedtools_2271dfsg-4_armhfdeb-hbiq
Unique Id 202JV56VXYIQ
Version (Raw) 2.27.1+dfsg-4
Version (Parsed)
  • Major: 2
  • Minor: 27
  • Patch: 1
  • Type: SemVer (Strict)
  • Metadata: dfsg-4
  extended metadata
Homepage https://github.com/arq5x/bedtools2
Installed Size 1.2 MB
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Priority optional
Section science
pkg bedtools_2.27.1+dfsg-4_armhf.deb 0
497.1 KB
md5 sha1 sha256 sha512
Package Contents (bedtools_2.27.1+dfsg-4_armhf.deb)
Loading...

This package has 61 files/directories.

Dependencies

7

Checksum (md5)

da06e3fe296a145f51714a4e91a77b24

Depends
libc6 >=2.23
Depends
libgcc1 >=1:3.5
Depends
libstdc++6 >=5.2
Depends
zlib1g >=1:1.2.3.3
Replaces
filo
Conflicts
filo
Provides
filo
Loading...

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[![This version of 'bedtools' @ Cloudsmith](https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/bedtools/2.27.1+dfsg-4/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true)](https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/bedtools/2.27.1+dfsg-4/a=armhf;xc=main;d=debian%252Fbuster;t=binary/)
|This version of 'bedtools' @ Cloudsmith|
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image::https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/bedtools/2.27.1+dfsg-4/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true[link="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/bedtools/2.27.1+dfsg-4/a=armhf;xc=main;d=debian%252Fbuster;t=binary/",title="This version of 'bedtools' @ Cloudsmith"]
<a href="https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/bedtools/2.27.1+dfsg-4/a=armhf;xc=main;d=debian%252Fbuster;t=binary/"><img src="https://api.cloudsmith.com/v1/badges/version/ultimaker/debian-backup/deb/bedtools/2.27.1+dfsg-4/a=armhf;xc=main;d=debian%252Fbuster;t=binary/?render=true" alt="This version of 'bedtools' @ Cloudsmith" /></a>

rendered as: This version of 'bedtools' @ Cloudsmith

To embed the badge for the latest package version, use the following:

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|Latest version of 'bedtools' @ Cloudsmith|
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   :target: https://cloudsmith.io/~ultimaker/repos/debian-backup/packages/detail/deb/bedtools/latest/a=armhf;xc=main;d=debian%252Fbuster;t=binary/
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rendered as: Latest version of 'bedtools' @ Cloudsmith

These instructions assume you have setup the repository first (or read it).

To install/use bedtools @ version 2.27.1+dfsg-4 ...

To install packages, you can quickly setup the repository automatically (recommended):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E bash

If you need to force a specific distribution, release/version, architecture, or component (if supported), you can also do that (e.g. if your system is compatible but not identical):

curl -1sLf \
  'https://dl.cloudsmith.io/public/ultimaker/debian-backup/setup.deb.sh' \
  | sudo -E distro=debian codename=buster arch=ARCH component=COMPONENT bash

or ... you can manually configure it yourself before installing packages:

apt-get install -y debian-keyring  # debian only
apt-get install -y debian-archive-keyring  # debian only
apt-get install -y apt-transport-https
# For Debian Stretch, Ubuntu 16.04 and later
keyring_location=/usr/share/keyrings/ultimaker-debian-backup-archive-keyring.gpg
# For Debian Jessie, Ubuntu 15.10 and earlier
keyring_location=/etc/apt/trusted.gpg.d/ultimaker-debian-backup.gpg
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/gpg.C334EFCB2C4F9BE3.key' |  gpg --dearmor >> ${keyring_location}
curl -1sLf 'https://dl.cloudsmith.io/public/ultimaker/debian-backup/config.deb.txt?distro=debian&codename=buster&component=main' > /etc/apt/sources.list.d/ultimaker-debian-backup.list
sudo chmod 644 ${keyring_location}
sudo chmod 644 /etc/apt/sources.list.d/ultimaker-debian-backup.list
apt-get update
sudo apt-get install bedtools=2.27.1+dfsg-4
Warning: Note that this package is for Debian 10 (Buster) / armhf and may only work for that configuration.
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