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Python logo brainsmash  0.0.7

One-liner (summary)

Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity.

Description

BrainSMASH

BrainSMASH (Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity) is a Python-based computational platform for statistical testing of spatially autocorrelated brain maps. At the heart of BrainSMASH is the ability to simulate surrogate brain maps with spatial autocorrelation that is matched to spatial autocorrelation in a target brain map. Additional utilities are provided for users using Connectome Workbench style surface-based neuroimaging files.

Exhaustive documentation can be found [here](https://brainsmash.readthedocs.io).

Dependencies

Installing BrainSMASH requires:

If you wish to use the additional utilities provided for Connectome Workbench users, you must have [Connectome Workbench](https://www.humanconnectome.org/software/get-connectome-workbench) installed with the wb_command executable locatable in your system PATH environment variable.

Installation

---

BrainSMASH is most easily installed using pip:

pip install brainsmash

You may also clone and install the source files manually:

git clone https://github.com/murraylab/brainsmash.git cd brainsmash python setup.py install

License

The BrainSMASH source code is available under the GNU General Public License v3.0.

Preprint

Please cite the following preprint if you use BrainSMASH in your research: https://www.biorxiv.org/content/10.1101/2020.02.18.955054v1

Core development team

  • Joshua B Burt, Murray Lab - Yale University
  • John D Murray, Murray Lab - Yale University

Change Log

---

  • 0.0.7 Removed console print statements.
  • 0.0.6 Fixed masked dense array handling.
  • 0.0.1 Initial beta release.

Size

253.3 KB

Downloads

5

Status  Completed
Checksum (MD5) 899a5124f714fb3406e4e5c3e2fb0610
Checksum (SHA-1) 4a0ae9b4edb1bfd6ee7a9b1866b720e93bb2bc4a
Checksum (SHA-256) e3e06d5d64653ced0e85ac8653d61f8a92cbf53c910c80bc0dcacd639b441c8d
Checksum (SHA-512) 1ae23abc2203b78459b54ec027ba05ebabc73316ff1eee7be14e47b7e1bc8cbb16…
GPG Signature
GPG Fingerprint 6811684bac0b8895434e97bdd4391b8fb999e537
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 4 months, 2 weeks ago
Uploaded By Fetched by Cloudsmith
Slug Id brainsmash-007-py3-none-anywhl-m12l
Unique Id Qs7MRksGnOL2TymB
Version (Raw) 0.0.7
Version (Parsed)
  • Major: 0
  • Minor: 0
  • Patch: 7
  • Type: SemVer (Compat)
  extended metadata
Author Joshua Burt <joshua.burt@yale.edu>
Classifiers License :: OSI Approved :: GNU General Public License v3 (GPLv3) | Programming Language :: Python :: 3.7
Homepage URL https://github.com/murraylab/brainsmash
Metadata Version 2.1
Py Filetype bdist_wheel
Py Version py3
Requires Dist matplotlib | nibabel (==2.1.0) | numpy | pandas | scipy | sklearn
Requires Python >=3
pkg brainsmash-0.0.7-py3-none-any.w… 5
253.3 KB
md5 sha1 sha256 sha512
Package Contents (brainsmash-0.0.7-py3-none-any.whl)
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This package has 28 files/directories.

 Newer Python logo
brainsmash
 0.11.0
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brainsmash
 0.10.0
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brainsmash
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brainsmash
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brainsmash
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brainsmash
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brainsmash
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brainsmash
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brainsmash
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brainsmash
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brainsmash
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brainsmash
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brainsmash
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brainsmash
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brainsmash
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Last scanned

4 months, 2 weeks ago

Scan result

Clean

Vulnerability count

0

Max. severity

Unknown

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Warning: We highly recommend using pip (or similar) rather than installing directly.
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