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 Public — demo-docs demo-docs / awesome-repo
A certifiably-awesome public package repository curated by demo-docs, hosted by Cloudsmith.
Packages 19189 Package Groups 1676 Public Keys

Python logo brainplotlib  1.0.0

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One-liner (summary)

A lightweight package to plot brain surfaces with Python.

Description

[![PyPI](https://img.shields.io/pypi/v/brainplotlib)](https://pypi.org/project/brainplotlib/) [![Downloads](https://static.pepy.tech/badge/brainplotlib)](https://pepy.tech/project/brainplotlib) ![PyPI - Python Version](https://img.shields.io/pypi/pyversions/brainplotlib) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5979819.svg)](https://doi.org/10.5281/zenodo.5979819)

brainplotlib is a Python package that plots data on cortical surface. It's designed to have minimal requirements --- only NumPy and matplotlib.

![brain image](https://github.com/feilong/brainplotlib/raw/main/images/example_data_with_colorbar.png)

## Installation The package can be installed with pip: `bash pip install brainplotlib `

## Example usage

See the [examples gallery](https://feilong.github.io/brainplotlib/examples/index.html) for all code examples with detailed explanations.

```Python import numpy as np from brainplotlib import brain_plot, example_data

# The example_data is icoorder5 resolution (10242 vertices per hemisphere), # and the non-cortical vertices have been masked out (9372 and 9370 remaining # vertices for the left and right hemisphere, respectively).

img, scale = brain_plot(
example_data, vmax=10, vmin=-10, cmap='seismic', return_scale=True)

```

The rendered image is a NumPy array. It can be rendered using matplotlib: `Python import matplotlib.pyplot as plt fig = plt.figure(figsize=(img.shape[1] / 200, img.shape[0] / 200), dpi=200) plt.imshow(img) plt.axis('off') cbar = plt.colorbar(scale, shrink=0.8, aspect=30) plt.savefig('example_data_with_colorbar.png', bbox_inches='tight') plt.show() `

Alternatively, the high-resolution image can be saved directly using OpenCV. ```Python import cv2 cv2.imwrite(

'example_data.png', np.round(img[:, :, [2, 1, 0]] * 255).astype(np.uint8))

```

## Citation If you use this software in your publications, please cite it [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5979819.svg)](https://doi.org/10.5281/zenodo.5979819) ```bibtex @software{brainplotlib,

author = {Ma Feilong and Guo Jiahui and M. Ida Gobbini and James V. Haxby}, title = {brainplotlib: plotting brain data on cortical surface}, month = feb, year = 2022, publisher = {Zenodo}, doi = {10.5281/zenodo.5979819}, url = {https://doi.org/10.5281/zenodo.5979819}

}

Status  Completed
Checksum (MD5) ec351361294504aa29c8a702aab19c4b
Checksum (SHA-1) 8d411f12661e14041de2bc961e14355a4f214cca
Checksum (SHA-256) e70a80799b87e057f5184a54f40323cc6827ecdc0ee0e137ee60ee95a8a30317
Checksum (SHA-512) 25591d105e7d7087bfb3334b747c213f04c157c7a6a81891deee27ad7f82b9476d…
GPG Signature
Download
GPG Fingerprint 6811684bac0b8895434e97bdd4391b8fb999e537
Storage Region  Dublin, Ireland
Type  Binary (contains binaries and binary artifacts)
Uploaded At 4 months, 3 weeks ago
Uploaded By Fetched by Cloudsmith
Slug Id brainplotlib-100-py3-none-anywhl-4ndl
Unique Id hLFJVFFMGBudgdko
Version (Raw) 1.0.0
Version (Parsed)
  • Major: 1
  • Minor: 0
  • Patch: 0
  • Type: SemVer (Compat)
  extended metadata
Author Ma Feilong <mafeilong@gmail.com>
Classifiers Programming Language :: Python :: 3 :: Only | Programming Language :: Python :: 3.10 | Programming Language :: Python :: 3.6 | Programming Language :: Python :: 3.7 | Programming Language :: Python :: 3.8 | Programming Language :: Python :: 3.9
Homepage URL https://feilong.github.io/brainplotlib/
Keywords brain,surface,fmri,plotting,visualization
Metadata Version 2.1
Project Urls Bug Tracker, https://github.com/feilong/brainplotlib/issues | Source Code, https://github.com/feilong/brainplotlib
Py Filetype bdist_wheel
Py Version py3
Requires Dist matplotlib | numpy | pytest ; extra == 'tests'
Requires Python >=3.6
pkg brainplotlib-1.0.0-py3-none-any… 7
8.0 MB 		md5 sha1 sha256 sha512
Package Contents (brainplotlib-1.0.0-py3-none-any.whl)
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This package has 29 files/directories.

Last scanned

4 months, 3 weeks ago

Scan result

Clean

Vulnerability count

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Warning: We highly recommend using pip (or similar) rather than installing directly.
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